Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0019 ATGGCTTGTCTCACTTCTCCTCCGTTTTCTCTGATTTTGATCCTTTCAGCTTCGTGGTTACTTCTTCCGGCAGAATCAGCCACATATTGGGGGGACCGAGAGGCTCTGAAGCAGCTCAAGAACGGCCTTCAGAATGCTTCCGTGAATCCAGGTTCGTGTGTTAGTTCTTGGGACTTCTCTGTCGACCCCTGCGACAACCTCTTGAGCGAAAAATTTACGTGCGGCTTCCGATGCGACGTTGTCGTCTCCGGGTCGAGTCGGGTCACCGAGATCACTCTCGACCAGGCAGGTTACGCCGCCTCACTCGCTTCCTCGTCTTGGAACCTTCCTTATTTGGAAACTCTAGACGTGTCTAACAACTACTTTTCCGGTGGCATTCCTGAGACCTTCGCCAACCTGACTCGTCTTCGCCGTCTCGCTCTGTCCGGGAATTTGTTGGACGGTGAGATTCCCTCTTCCATTGTGTTCCTCTCCAATCTTGAAGAGCTTTACCTCGATAACAATAATCTTCAAGGGACAATCCCTCCCAGCCTGAACGGGCTCAAGAGCTTGAAAAGGCTCGAACTTCAACTCAACACTCTCCAGGGTGAGATTCCTGATCTCGGTTCTCTCGAGAACCTTTACTATCTAGACATCAGCGACAACGCTGTAACTGGCGGAATTCCGGCGACGTTGCCCAAATCCTTGGTTCAAATCTCAATGAGGAACAATAGCCTGAGCGGAGGTTTAAGATTGGAAAGCTTCAGGGGCCTGACTGATTTGCAGGTTCTAGATTTGAGTTACAACAGTCTGAAGGACTCTGTGCCTGTGGTTCTATTTGAGCTGCCGTCGCTGGAGCAACTGAGTCTGTCGTTCAACAAATTCTCGGCCATGGAAGCGCCATCTTACAATGCTGGATCGCAGAGTGGGCTAATAGCGGTCGATGTGAGCAACAACGAGATTCAAGGGCTGTTGCCTTGGTTCATGGGAGTGATGCCAAAGCTGTCGTCATTGTCGTTGGAGAACAACAAGTTTACGGGAATGATACCAACGCAGTACGCATTGAAGACGGTGTTTCCGGAGATGGGAATATCGCCGTTTGGGAGGCTAATATTGAGCGGCAACTACCTGATTGGGGGCATACCCAGCCCCCTGCTGGTACTCAAACCGGGCTCTGCGAATGTGACGTTAGGGGACAATTGCTTGTTCAGATGCCCCCTGAGGTTCTTTTTCTGTGACCAACAAAAATCATTGGACGTATGCAACAGATTTAGCCCCTTCATCCCTTAG 1269 0.5051 MACLTSPPFSLILILSASWLLLPAESATYWGDREALKQLKNGLQNASVNPGSCVSSWDFSVDPCDNLLSEKFTCGFRCDVVVSGSSRVTEITLDQAGYAASLASSSWNLPYLETLDVSNNYFSGGIPETFANLTRLRRLALSGNLLDGEIPSSIVFLSNLEELYLDNNNLQGTIPPSLNGLKSLKRLELQLNTLQGEIPDLGSLENLYYLDISDNAVTGGIPATLPKSLVQISMRNNSLSGGLRLESFRGLTDLQVLDLSYNSLKDSVPVVLFELPSLEQLSLSFNKFSAMEAPSYNAGSQSGLIAVDVSNNEIQGLLPWFMGVMPKLSSLSLENNKFTGMIPTQYALKTVFPEMGISPFGRLILSGNYLIGGIPSPLLVLKPGSANVTLGDNCLFRCPLRFFFCDQQKSLDVCNRFSPFIP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0019 422 Gene3D Ribonuclease Inhibitor 31 201 IPR032675 -
Lele54g0019 422 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 12 410 - -
Lele54g0019 422 SUPERFAMILY L domain-like 83 349 - -
Lele54g0019 422 Pfam Leucine rich repeat 108 146 IPR001611 GO:0005515
Lele54g0019 422 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Lele54g0019 422 Pfam Leucine rich repeat 158 216 IPR001611 GO:0005515
Lele54g0019 422 Gene3D Ribonuclease Inhibitor 202 422 IPR032675 -
Lele54g0019 422 SMART LRR_typ_2 157 181 IPR003591 -
Lele54g0019 422 SMART LRR_typ_2 275 298 IPR003591 -
Lele54g0019 422 SMART LRR_typ_2 109 132 IPR003591 -
Lele54g0019 422 SMART LRR_typ_2 251 274 IPR003591 -
Lele54g0019 422 SMART LRR_typ_2 325 348 IPR003591 -
Lele54g0019 422 FunFam Nuclear pore complex protein NUP107 30 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0019 Lele-ChrLele54 224960 226228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0019 26 378 Receptor kinase-like Gene Family AT2G25790 34.349 4.40e-32 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0019 54 224960 226228 Lele54g0019 54 224960 226228 ECH
Lele53g0020 53 202818 204086 Lele54g0019 54 224960 226228 ECH
Lele54g0019 54 224960 226228 Lele55g1474 55 20875826 20877094 hybridization
Lele54g0019 54 224960 226228 Lele56g1407 56 17126400 17127668 hybridization