Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1474 ATGGCTTGTCTCACTTCTCCTTCGTTTTCTTTGATTTTGATTCTTTCAGCCGCGTGGTCGCTTTTTCCGGCTGGATCAACCACATATTGGGGTGATGTAGAGGCTCTGAAGCAACTCAAGAACGGCATTCAGAATGCTTCCGTGAATCCAGGTTCTTGTGTTAGTTCTTGGGACTTCTCTGTCGACCCTTGCGACAACCTCTTGAGCGAAAAATTCACTTGTGGCTTCCGATGCGATGCTGTCGTCTACGGGTCGAGTCGGGTCACCGAGATCACTCTCGACCAAGCGGGTTACGCCGCCTCACTCGCCTCCTCGTCTTGGAACCTTCCTTATTTGGAAACTCTCGACGTATCTAACAACTACTTTTCCGGTGGGGTTCCTGAGTCCTTCTCCAACTTGACTCGTCTTCGCCGCCTCGCTCTGTCCGGGAATTTGTTGGACGGTGAGATTCCCTGTTCCATTGGGTTCCTCCCCAATCTCGAAGAACTTTACCTTGATAACAATAATCTTCAAGGGACAATACCTCCCAGCTTGAACGGGCTCAAGAGCTTGCAAAGACTCGAACTTCAACTCAACAATCTCAAGGGTGAGATTCCTGATCTCGGTTCTCTCGAGAACCTTTACTATCTCGACATCAGCGACAACGCCGTCGCTGGCGGCATTCCGGCCACATTGCCCAAATCCTTGGTTCAAATCTCAATGAGGAACAATAGCCTGAGCGGAGGTTTAAGATCGGAAAGCTTCAGAGGCTTGACGGATTTACAGGTTTTGGATTTGAGTTACAACAGTCTGAAGGGCTCTGTGCCTCTGGTTCTATTTGAGCTGCCGTCGCTGGAGCAACTGAGTCTGCCGTTCAACAAATTCTCGGCGATGGAAGCGCCATCTTACAGTGCGAGATCGCAGAGTGGGTTAATAGCGGTTGATCTGAGCAACAACGAGATTCAGGGGCTGTTGCCTTGGTTCATGGGAGTGATGCCAAAGCTGTCGTCATTGTCATTGGAGAACAATAAGTTTACGGGAATGATACCGACGGAGTACGCAATGAAGACGGTGTTTCCGGAGATGGGAATATCGCCGTTCGGGAGGCTAATATTGAGCGGCAACTACCTGGTTGGGGGAATACCCAGTCCCTTGCTGCTACTCAAACCGGGTTCTGCAAATGTGACGTTAGGGGACAATTGTTTGTTCAGATGCCCCCTGAGGTTCTTTTTCTGTAACGAACAAAAATCATTGGACGTATGCAATAGGTTTAGCCCCTTCATCCCTTAG 1269 0.4957 MACLTSPSFSLILILSAAWSLFPAGSTTYWGDVEALKQLKNGIQNASVNPGSCVSSWDFSVDPCDNLLSEKFTCGFRCDAVVYGSSRVTEITLDQAGYAASLASSSWNLPYLETLDVSNNYFSGGVPESFSNLTRLRRLALSGNLLDGEIPCSIGFLPNLEELYLDNNNLQGTIPPSLNGLKSLQRLELQLNNLKGEIPDLGSLENLYYLDISDNAVAGGIPATLPKSLVQISMRNNSLSGGLRSESFRGLTDLQVLDLSYNSLKGSVPLVLFELPSLEQLSLPFNKFSAMEAPSYSARSQSGLIAVDLSNNEIQGLLPWFMGVMPKLSSLSLENNKFTGMIPTEYAMKTVFPEMGISPFGRLILSGNYLVGGIPSPLLLLKPGSANVTLGDNCLFRCPLRFFFCNEQKSLDVCNRFSPFIP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1474 422 Pfam Leucine rich repeat 158 216 IPR001611 GO:0005515
Lele55g1474 422 Pfam Leucine rich repeat 108 146 IPR001611 GO:0005515
Lele55g1474 422 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Lele55g1474 422 SMART LRR_typ_2 251 275 IPR003591 -
Lele55g1474 422 SMART LRR_typ_2 109 132 IPR003591 -
Lele55g1474 422 SMART LRR_typ_2 157 181 IPR003591 -
Lele55g1474 422 SMART LRR_typ_2 325 348 IPR003591 -
Lele55g1474 422 Gene3D Ribonuclease Inhibitor 31 201 IPR032675 -
Lele55g1474 422 Coils Coil 184 204 - -
Lele55g1474 422 FunFam Nuclear pore complex protein NUP107 30 200 - -
Lele55g1474 422 SUPERFAMILY L domain-like 83 348 - -
Lele55g1474 422 Gene3D Ribonuclease Inhibitor 202 422 IPR032675 -
Lele55g1474 422 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1474 Lele-ChrLele55 20875826 20877094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1474 108 422 Receptor kinase-like Gene Family AT2G25790 32.880 7.87e-27 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1474 55 20875826 20877094 Lele55g1474 55 20875826 20877094 ECH
Lele55g1474 55 20875826 20877094 Lele56g1407 56 17126400 17127668 ECH
Lele53g0020 53 202818 204086 Lele55g1474 55 20875826 20877094 hybridization
Lele54g0019 54 224960 226228 Lele55g1474 55 20875826 20877094 hybridization