Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1286 ATGGACGCGGAAGCAGCCGGCGCTGGCGTCGCCGTCGACGATCTTCCTATGACGGCTGCCTTATCGGGGTGGAAATTCGCCGTGACCCGGAAGTATCAGCATCTGCTCGACAAAGCGACACCGCACGTCTTCCACCGTTGGATCGCCTGCTTAGTCGTGGTCTTCATCTACGTTGTCCGCGTCTACTTCGTTCAGGGGTTCTACATCGTCTCCTATGGTTTAGGCATTTACATCCTCAACCTTCTCATCGGATTTCTCTCCCCTCAGGTTGACCCCGAGATCCAGGAAATCTCTGATGGTCCATCCCTTCCCACCAGGGGGTCTGATGAATTCCGTCCTTTCGTTCGCCGGCTCCCGGAGTTTAAGTTCTGGTACTCGATCACAAAGGCATTTTGCATTGCGTTTGTGATGACATTTTTTAGTGTATTTGATGTACCTGTGTTTTGGCCAATTCTTCTCTTCTACTGGGTAGTCCTATTCTCCCTTACCATGAGGAGACAGATATCTCACATGATCAAATACAGATACGTGCCATTCACATTTGGGAAACAGCGCTATGATGGAAAGAGAACAACGGAAGAGAGCGCAGCCATTCTTCCTAGGGACTGA 609 0.5057 MDAEAAGAGVAVDDLPMTAALSGWKFAVTRKYQHLLDKATPHVFHRWIACLVVVFIYVVRVYFVQGFYIVSYGLGIYILNLLIGFLSPQVDPEIQEISDGPSLPTRGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSVFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFTFGKQRYDGKRTTEESAAILPRD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1286 202 PIRSF AtER_Rer1p 13 197 IPR004932 GO:0016020
Lele56g1286 202 Pfam Rer1 family 27 186 IPR004932 GO:0016020
Lele56g1286 202 PANTHER PROTEIN RER1 17 191 IPR004932 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1286 Lele-ChrLele56 16118746 16120131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1286 1 196 Miscellaneous Gene Families AT4G39220 67.347 6.74e-96 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0151 53 1211210 1212856 Lele56g1286 56 16118746 16120131 hybridization
Lele54g0151 54 1271091 1272801 Lele56g1286 56 16118746 16120131 hybridization