Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1176 ATGGCGCCTACGAAGGAGCAACCATCACCGGCCTTTCTTGACACTGTTGAAGAGATTACAAGAATTTACAGATCGCTTCCTCTTCGACCTTCGATGGAAGAAGTCGAAGCTGCCACTTCTGCTATTGAAACTATCAATAGCGAGGAGGATATGAAGCTCCAGGAAGTCTCAATGCAGCAAGTCCCCAATGGTGTACCCAAGCAGCTTTTCTCTCTGTTACAAGAATTGAAGAAGACCGTTGTCTTGTATCAGAGCCATGAACAGAGGAAAGAAGCTCTCCACCTTCTTCAACAAGAGAAGATGTTTCAGACCCTTGCTGATCTTATTCAGAGGGCTTCACAGTTCGTTTCTCGGGACGCTACGGAAGCGGAAATTACCAATTTAGCCGAACCGGCGGGGAAAATCGAGACAGATGTTGATATCGGTGATGACAGTCTGGTGAAGGGAAAGGAAGACGGAGAAAAACCGGAGAAAATCAACCTCAATGTTGAAAGAAGATCCTCCGCGAAGATATCTTTCTCTGCTGATGATGGAAACTCAGAGAAATTAAGCCTCATGAAAGTTGCCACGGTTATTGAAAACTGTGCTAATACTGGAGCAGCAATCCTTGAGCTTAGAGGGAAACTTGTGGACCAGATGGAATGGTTGCCTGTTTCAATTGGGAAACTCTCTCATGTCTGTGAAATTGACCTATCTGAGAACAGAATCATGGCTCTTCCTTCCACCTTTGGAGATCTCAAGGCCTTAACAAAGCTTGATCTTCATGCCAACCAGCTTATAAACCTTCCACACACTTTTGGGGAATTGATCAACCTCACTGATCTTGACCTCCGCAGTAATAGATTGAGATCACTGCCAGCTTCTTTTGAAGAGTTGGAGAATCTCATTGATCTTGACCTGAGTTCAAATGAGTTCACACAATTACCAGATTTTATTGGGAATTTAAGAAGCTTGAGAAGATTAAATGTTGAGACAAACGAACTTGAGGAGCTACCTTATACAGTTGGAAATTGCTCATCACTGTCAGAGTTGAGATTAGATTTTAATCAGCTCAAAGCCCTTCCTGAGGCAATTGGGAATCTTGAGCTCTTGGAGATTTTAACTCTACACTATAACAGAGTTAAAAGGTTGCCTACTAAAATGGGTAACCTGAGCAGATTGAAGGAACTTGATGCTAGCTTTAATGAACTGGAACTTGTACCAGAGAACCTATGTTTTACTGTGAGTCTGAAGAAATTAAATGTGTCAAATAACTTTTCAGACCTAAGAGCCTTGCCAAAATCAATTGGTAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAAGCATTACCAGAATCTTTCAGGTTCTTGTCCAAATTGAGAGTTTTCCGTGCTGATCAGACTCCTCTTGAAGTACCACCCAGAGAAGTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCAGTACATGGCAGATTTTGTAGCCAAGAGGGATGCGAAATTTCTGGTACCAAAGAAGAAGAGGGGGTTTTGGTTCTGGTTTTGCTCAATATTTTGCCTCCAAAAGAGAAGATTGTGA 1569 0.4226 MAPTKEQPSPAFLDTVEEITRIYRSLPLRPSMEEVEAATSAIETINSEEDMKLQEVSMQQVPNGVPKQLFSLLQELKKTVVLYQSHEQRKEALHLLQQEKMFQTLADLIQRASQFVSRDATEAEITNLAEPAGKIETDVDIGDDSLVKGKEDGEKPEKINLNVERRSSAKISFSADDGNSEKLSLMKVATVIENCANTGAAILELRGKLVDQMEWLPVSIGKLSHVCEIDLSENRIMALPSTFGDLKALTKLDLHANQLINLPHTFGELINLTDLDLRSNRLRSLPASFEELENLIDLDLSSNEFTQLPDFIGNLRSLRRLNVETNELEELPYTVGNCSSLSELRLDFNQLKALPEAIGNLELLEILTLHYNRVKRLPTKMGNLSRLKELDASFNELELVPENLCFTVSLKKLNVSNNFSDLRALPKSIGNLEMLEELDISDDQIKALPESFRFLSKLRVFRADQTPLEVPPREVVKLGAQEVVQYMADFVAKRDAKFLVPKKKRGFWFWFCSIFCLQKRRL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1176 522 ProSiteProfiles Leucine-rich repeat profile. 294 315 IPR001611 GO:0005515
Lele56g1176 522 SUPERFAMILY L domain-like 212 468 - -
Lele56g1176 522 Gene3D Ribonuclease Inhibitor 176 492 IPR032675 -
Lele56g1176 522 Pfam Leucine rich repeat 271 328 IPR001611 GO:0005515
Lele56g1176 522 ProSiteProfiles Leucine-rich repeat profile. 271 292 IPR001611 GO:0005515
Lele56g1176 522 SMART LRR_bac_2 407 428 - -
Lele56g1176 522 SMART LRR_bac_2 292 311 - -
Lele56g1176 522 SMART LRR_bac_2 269 288 - -
Lele56g1176 522 SMART LRR_bac_2 384 403 - -
Lele56g1176 522 SMART LRR_bac_2 246 265 - -
Lele56g1176 522 SMART LRR_bac_2 338 357 - -
Lele56g1176 522 SMART LRR_bac_2 315 334 - -
Lele56g1176 522 SMART LRR_bac_2 432 451 - -
Lele56g1176 522 PANTHER - 214 421 - -
Lele56g1176 522 SMART LRR_typ_2 246 268 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 361 383 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 269 291 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 223 245 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 339 360 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 292 314 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 315 338 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 432 454 IPR003591 -
Lele56g1176 522 SMART LRR_typ_2 384 407 IPR003591 -
Lele56g1176 522 SMART LRR_sd22_2 384 406 - -
Lele56g1176 522 SMART LRR_sd22_2 269 294 - -
Lele56g1176 522 SMART LRR_sd22_2 246 264 - -
Lele56g1176 522 FunFam Plant intracellular Ras-group-related LRR protein 4 182 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1176 Lele-ChrLele56 15222346 15224562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1176 249 482 Receptor kinase-like Gene Family AT3G28890 31.600 8.34e-17 81.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0257 53 2136412 2140272 Lele56g1176 56 15222346 15224562 hybridization
Lele54g0261 54 2206528 2208752 Lele56g1176 56 15222346 15224562 hybridization