Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1080 ATGTCTTCAAAAGCTAAAGCCTTGTTGTTCATCTTCATGATTTCAACATTAAGCTCTCTTTCAGCACTAACATATACTTGTGGTGATGATCCTTATTGCCACTGGCATTGTCATCCCAAAACCAAATGCCACAAACCGCCTCATCATGGCGGCGGCCACCCGAAAGTGTCGCCTCCAAAGCCCCCGGGCGTTCTCCCGCCGATCATTGTCAAGCCCCCACCAGCATCCCCTCCAATCATTGTCAAGCCGCCACCAGGATCCCCGCCGGTTATAATAAACCCACCACCGATTGCACCTTCACCGCCATACTGGGTTCCCAGTCCTCCTCCTCAATTGAGGTGTCCCATTGATGCCCTAAAGCTAGGGCTGTGTTTGGATGTGCTTGGAGGACTTGTGCATGTGCGAATAGGGAACCCTATTGAGAATATATGCTGTCCAGTGATCCAAGGATTGCTTGATCTTGAAGCAGCGATATGTCTTTGCACTGTTATCAGACTTAAGCTTCTGAATCTCAACATATTCGTTCCTCTTGCTCTTCAAGTTCTTGCTACTTGTGGCTTCACTCCTCCTCCTGGTTTTGTTTGTCCACCTTTATTATAA 600 0.4817 MSSKAKALLFIFMISTLSSLSALTYTCGDDPYCHWHCHPKTKCHKPPHHGGGHPKVSPPKPPGVLPPIIVKPPPASPPIIVKPPPGSPPVIINPPPIAPSPPYWVPSPPPQLRCPIDALKLGLCLDVLGGLVHVRIGNPIENICCPVIQGLLDLEAAICLCTVIRLKLLNLNIFVPLALQVLATCGFTPPPGFVCPPLL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1080 199 CDD HPS_like 113 195 IPR027923 -
Lele56g1080 199 Pfam Hydrophobic seed protein 113 196 IPR027923 -
Lele56g1080 199 SMART aai_6 114 195 IPR016140 -
Lele56g1080 199 Gene3D - 109 197 IPR036312 -
Lele56g1080 199 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 116 197 IPR036312 -
Lele56g1080 199 PANTHER - 9 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1080 Lele-ChrLele56 14233574 14234173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1080 114 197 Acyl Lipid Metabolism Gene Families AT4G22490 36.905 9.47e-09 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0355 53 3127438 3128169 Lele56g1080 56 14233574 14234173 hybridization
Lele54g0363 54 3135038 3135670 Lele56g1080 56 14233574 14234173 hybridization