Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1079 ATGGCTTCCAAAACTTCCTCTTTTGCTCTTTTCCTTGTCCTCAACCTCCTCTTCTTCTCACTTGTCACTGCATGCGGCTCATGCGGGGGCTACCCTAACCCAAAACCCAAGCCAAACCCGAACCCGAATCCTAGCCCGTCTGGAAGTGGCACATGCCCTCGTGATGCCCTAAAACTAGGGGTGTGCGCTAATGTTCTGAATGGTTTGCTTAATGTGACCCTTGGACAGCCACCAGTGACCCCTTGTTGCACTCTGATTCAAGGACTTGCTGACCTTGAAGCTGCAGTATGCCTCTGCACTGCCCTTAAAGCTAACATTTTGGGCATTAACCTCAACATTCCCATCTCTCTCAGTTTGCTTCTCAATGTTTGCTCTAAAACTGTTCCTCATGGTTTCCAATGTGCCTAA 408 0.4902 MASKTSSFALFLVLNLLFFSLVTACGSCGGYPNPKPKPNPNPNPSPSGSGTCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCTLIQGLADLEAAVCLCTALKANILGINLNIPISLSLLLNVCSKTVPHGFQCA 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1079 135 CDD HPS_like 50 134 IPR027923 -
Lele56g1079 135 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 54 134 IPR036312 -
Lele56g1079 135 FunFam pEARLI1-like lipid transfer protein 1 50 135 - -
Lele56g1079 135 SMART aai_6 52 134 IPR016140 -
Lele56g1079 135 Gene3D - 51 135 IPR036312 -
Lele56g1079 135 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Lele56g1079 135 Pfam Hydrophobic seed protein 51 135 IPR027923 -
Lele56g1079 135 PANTHER - 5 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1079 Lele-ChrLele56 14226654 14227061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1079 43 134 Acyl Lipid Metabolism Gene Families AT4G22490 39.785 2.38e-16 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0356 53 3135142 3135543 Lele56g1079 56 14226654 14227061 hybridization
Lele54g0364 54 3142779 3143168 Lele56g1079 56 14226654 14227061 hybridization