Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0364 ATGGCTTCCAAAACTTCCTCTTTTGCTCTTTTCCTTGTCCTCAACCTCCTCTTCTTCTCACTTGTCACTGCATGCGGCTCATGCGGGGGCTACCCTAACCCAAAACCCAAGCCAAACCCGTATGGAAGTGGCACATGCCCTCGTGATGCCCTAAAACTAGGGGTGTGTGCTAATGTTCTGAATGGTTTGCTTAATGTGACCCTTGGACAGCCACCAGTGACCCCTTGTTGCTCTCTGATTCAAGGACTTGCTGACCTTGAAGCTGCCGTATGCCTCTGCACTGCCCTTAAAGCTAAAATTTTGGGCATTAACCTCAACATTCCCATCTCTCTCAGCTTGCTTCTCAATGTTTGCTCTAAAAATGTTCCTCGTGGTTTCCAATGTGCCTAA 390 0.4821 MASKTSSFALFLVLNLLFFSLVTACGSCGGYPNPKPKPNPYGSGTCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCSLIQGLADLEAAVCLCTALKAKILGINLNIPISLSLLLNVCSKNVPRGFQCA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0364 129 CDD HPS_like 44 128 IPR027923 -
Lele54g0364 129 Pfam Hydrophobic seed protein 45 129 IPR027923 -
Lele54g0364 129 SMART aai_6 46 128 IPR016140 -
Lele54g0364 129 Gene3D - 45 129 IPR036312 -
Lele54g0364 129 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 48 128 IPR036312 -
Lele54g0364 129 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Lele54g0364 129 PANTHER - 5 128 - -
Lele54g0364 129 FunFam pEARLI1-like lipid transfer protein 1 44 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0364 Lele-ChrLele54 3142779 3143168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0364 44 128 Acyl Lipid Metabolism Gene Families AT4G22490 40.000 9.08e-15 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0364 54 3142779 3143168 Lele55g1131 55 17781373 17781810 hybridization
Lele54g0364 54 3142779 3143168 Lele56g1079 56 14226654 14227061 hybridization