Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1229 ATGACATTGCAGACAGAACATTGTTCAAAGAGCATGACAATTCTTCTGGTTGCTTGTTATGATTATTCCAATTTGCTTTCTTGTACAGAGGTCAGAGCACACTTCGTAAAACCAGCCCCTTACCTTACCTCTTTGCTCCATCCTCTCCACCTTGCTCGAGGCGTGGCAGAGAAAATCATAGCCAAGGCCATGGCGCCTACGAAGGACCCACCATCACCGGCCTTTCTTGACACCGTTGAAGAGATTACGAGAATTTACCGATCACTTCCTCTTCGACCTTCGATTGAAGAAGTCGAAGCTGCTACTTCTGCTATCGAAACTATCAATAGTGAGGAGAATATGAAGCTCCAGGAAATCTCAATGCAGCAAGTCCCCCACGGTGTCCCCGAGCAGCTTTTCTCTCTGTTACAAGAATTGAAGAAGACCGTTGTCTTGTTCCAGAGCCATGAACAGAGGAAAGAAGCTCTCCACCTTCTTAAACAAGAGGAGATGTTTCAAACCCTTGCTGATCTTATTCAGAGGGCTTCTCAATTCGTTTCTGGGGACGCTACGGAACCGGAAGTGCCCAATTTAGCCGAACCGGCGGGGAAAATCGAGACAGATGTCGGTATCGGTGATGAAAATCTCATGAAGGGAAAGGAAGACGGAGAAAAACCGGAGAAAATCAATCTCGACTTTGAAAGAAGATCCTCCGCGAAGATATCTTTCTCTGCTGATGATGGAAACTCGGAGAAATTAAGTCTCATGAAAGTTGCCACGGTTATTGAAAACTGTGCTAATAGTGGAGCAGAAATCCTTGAGCTTAGAGGGAAACTTGTGGACCAGATGGAATGGTTGCCTGTTTCAATTGGGAAACTCTCTCATGTCCGTGAAATGGACCTATCTGAGAACAGAATCATGGCTCTTCCTTCCACCTTTGGAGATCTCAAGGCCTTAACAAAGCTTGATCTTCATGCCAACCAGCTTATAAACCTTCCACACACTTTTGGGGAATTGATCAACCTCACTGATCTTGACCTCCGCGGCAATAGATTGAGATCACTACCAGCTTCTTTTGAAAAGTTGGAGAATCTCGTTGATCTTGACCTGAGTTCAAACGAGTTCACACAATTACCTGATTTGATTGGGAATTTAAGAAGCTTGAGGAGATTAAATGTTGAGACAAATGAACTTGAGGAGCTACCTTATACAATTGGAAATTGCTCGTCACTCTCAGAGTTGAGATTAGATTTTAATCAGCTCAAAGCCCTCCCTGAGGCAATTGGGAATCTTGAGCTCGTAGAGATTTTAACTCTGCACTATAACAGAGTTAAAAGGCTGCCTACTACAGTGGGGAACCTGAGCAGATTGAAGGAACTTGATGCAAGCTTTAATGAACTGGAATTTGTACCAGAGAATCTATGTTTTGCTGTGAGTCTGAAGAAATTAAATGTGTCGAATAACTTCACAGACCTAAGAGCCTTGCCAAAATCAATTGGGAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAAGAATTACCAGAGTCTTTCAGGTTCTTGTCCAAATTGAGAGTTTTCCGTGCTGATCAGACTCCTCTTGAGGTACCTCCCAGAGAAGTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCAGTACATGGCCGATTTTGTAGCCAAGAGGGAAGCGAAATTTCTGGTACCAAAGAAGAAGAGGGGGTTTTGGTTCTGGTTTTGCTCAGTATTTTGCCCCCAACAGAGACGATTGTGA 1758 0.438 MTLQTEHCSKSMTILLVACYDYSNLLSCTEVRAHFVKPAPYLTSLLHPLHLARGVAEKIIAKAMAPTKDPPSPAFLDTVEEITRIYRSLPLRPSIEEVEAATSAIETINSEENMKLQEISMQQVPHGVPEQLFSLLQELKKTVVLFQSHEQRKEALHLLKQEEMFQTLADLIQRASQFVSGDATEPEVPNLAEPAGKIETDVGIGDENLMKGKEDGEKPEKINLDFERRSSAKISFSADDGNSEKLSLMKVATVIENCANSGAEILELRGKLVDQMEWLPVSIGKLSHVREMDLSENRIMALPSTFGDLKALTKLDLHANQLINLPHTFGELINLTDLDLRGNRLRSLPASFEKLENLVDLDLSSNEFTQLPDLIGNLRSLRRLNVETNELEELPYTIGNCSSLSELRLDFNQLKALPEAIGNLELVEILTLHYNRVKRLPTTVGNLSRLKELDASFNELEFVPENLCFAVSLKKLNVSNNFTDLRALPKSIGNLEMLEELDISDDQIKELPESFRFLSKLRVFRADQTPLEVPPREVVKLGAQEVVQYMADFVAKREAKFLVPKKKRGFWFWFCSVFCPQQRRL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1229 585 PANTHER LEUCINE-RICH REPEAT-CONTAINING 357 537 - -
Lele55g1229 585 SMART LRR_bac_2 332 351 - -
Lele55g1229 585 SMART LRR_bac_2 495 514 - -
Lele55g1229 585 SMART LRR_bac_2 309 328 - -
Lele55g1229 585 SMART LRR_bac_2 378 397 - -
Lele55g1229 585 SMART LRR_bac_2 447 466 - -
Lele55g1229 585 SMART LRR_bac_2 470 491 - -
Lele55g1229 585 SMART LRR_bac_2 355 374 - -
Lele55g1229 585 SMART LRR_bac_2 401 420 - -
Lele55g1229 585 SMART LRR_bac_2 286 305 - -
Lele55g1229 585 ProSiteProfiles Leucine-rich repeat profile. 357 378 IPR001611 GO:0005515
Lele55g1229 585 Pfam Leucine rich repeat 334 391 IPR001611 GO:0005515
Lele55g1229 585 Gene3D Ribonuclease Inhibitor 239 556 IPR032675 -
Lele55g1229 585 SUPERFAMILY L domain-like 266 532 - -
Lele55g1229 585 FunFam Plant intracellular Ras-group-related LRR protein 4 245 553 - -
Lele55g1229 585 ProSiteProfiles Leucine-rich repeat profile. 334 356 IPR001611 GO:0005515
Lele55g1229 585 SMART LRR_typ_2 447 470 IPR003591 -
Lele55g1229 585 SMART LRR_typ_2 332 354 IPR003591 -
Lele55g1229 585 SMART LRR_typ_2 378 401 IPR003591 -
Lele55g1229 585 SMART LRR_typ_2 355 377 IPR003591 -
Lele55g1229 585 SMART LRR_typ_2 402 424 IPR003591 -
Lele55g1229 585 SMART LRR_typ_2 495 517 IPR003591 -
Lele55g1229 585 SMART LRR_typ_2 309 331 IPR003591 -
Lele55g1229 585 SMART LRR_typ_2 286 308 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1229 Lele-ChrLele55 18865478 18869055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1229 378 532 Receptor kinase-like Gene Family AT3G11080 36.025 1.11e-14 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0257 53 2136412 2140272 Lele55g1229 55 18865478 18869055 hybridization
Lele54g0261 54 2206528 2208752 Lele55g1229 55 18865478 18869055 hybridization