Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1196 ATGATTTGGCTCCAGTGTATGCAAATTCAGATTTCAGAAAAATTAATGAAGGAGGATGCTTCAAAAAAGTACTGCAGGGGGTCAACTTCATCCCCTTCCCATAAATTCCACCAAATCCTAATTCATTCATACATTTCCTTCCTCCATTCATCTTCAACTACAACCAAAGAAACACAGAAAGCAAAAAAGAAAACAGAAAAAATGGCTTTAACACTTCGTTCTTCAAATTCCTTGTTTTCCCAAATAGAAACCCAAGTTCCCAAACCTTCCGACGATTACTCATCTTCTTCCACAGTTTGCTTTGCAAGAATCAAACCACCACCGTCATCACTCCGTCTCAGAGCAAGCCATGTCCCAGCTGTCTCCGGGGGAACCACCGGCAACACGGCGGTGGAGTTGGAGCTGCATCATCCTCCATTGGTGACTCCTCATAAGCACGACCAGTCGATGAAAGTGCCGGTGTTCGTGATGCTGCCATTAGACACAGTGACGATGGGAGGAACTCTGAATAAAGCACGAGCCATGAACGCAAGTCTCATGGCTCTAAAAAATGCAGGAGTTGAAGGAGTAATGGTGGACGCTTGGTGGGGTTTAGTTGAAAAAGATGGCCCTCAGAAATATAACTGGGAAGCCTACGCTGAACTTGTTCACATGGTTCAGAAACATGGATTAAAGCTTCAAATCGTCATGTCATTCCATCAATGTGGAGGAAACGTCGGCGACTCCTGCAGTATTCCTCTACCTCCATGGGTGCTTGAAGAAATCAGCAAGAATCCTGACCTGGTTTACACAGACAGATCCGGGAGGAGAAATCCTGAGTATATTTCTTTGGGGTGTGATTTGATTCCTGTTCTTAGAGGAAGAACACCTCTTCAGGTTTACTCTGACTTCATGAGTAGTTTCAGAGACAGATTCAGAGATTACCTGGGCAGTGTTATCCAAGAAATTCAAGTAGGGATGGGTCCTTGTGGTGAACTCAGATATCCATCTTATCCAGAAAGCAATGGAACTTGGAAGTTTCCTGGAATTGGGGAATTCCAGTGTTACGACAAGTATATGAGGGCGTCGTTGGAAGCAGCGGCAGAGGCGATAGGCAATAGAGATTGGGGGAGAAGTGGGCCCCACGATTCCGGCCAATACAATCAATTCCCGGAAGACACTGGATTCTTCAAGCGTGAAGGAACATGGAACTCCGATTACGGAAGCTTCTTCCTCAACTGGTACTCCGACAAATTGATCGAACACGGTGACAGGATTCTCGAATCCGCTGGCCTGATATTCCAATCCACCGGAGCGAAACTCTCAGCCAAAATCGCCGGAATCCATTGGCATTACAACACAAGATCACACGCCGCAGAGCTAACAGCCGGGTACTACAACACTAGATTCCGCGACGGCTACCTACCCATCGCACAAATGGTAGCGAAACACGGAGTGATCTTCAACTTCACGTGCATGGAGATGAAAGATTCGCAGCAACCACATCACGCGGGTTGCTCACCGGAGGGACTGGTTCGTCAGGTGAAGATGGCGACGAGGACGGCGAGAGTACAACTCGCCGGCGAGAACGCGTTAGAGAGATACGATTGGGATGGGTACGGCCAGGTATTGGAAACGAGCAGATTGGATTGTGGGAATGGATTGGTGTCGTTCACGTATCTGAGGATGAACAAGAGATTGTTCGAAGAACAGAATTGGAGGCAATTTGTGGAATTTGTGAGGAGCATGTCGGAAGGTGGCCGGAGACAGAGACTTCCCGATTACGATTCGCATGGAACTGATCTTTACGTTGCACACATTAAAGGGATTCAGAAGAAGAAGAAGAAGCATGTTCAAGATCAAGAGGTAGTTCTAGTGTGA 1860 0.4699 MIWLQCMQIQISEKLMKEDASKKYCRGSTSSPSHKFHQILIHSYISFLHSSSTTTKETQKAKKKTEKMALTLRSSNSLFSQIETQVPKPSDDYSSSSTVCFARIKPPPSSLRLRASHVPAVSGGTTGNTAVELELHHPPLVTPHKHDQSMKVPVFVMLPLDTVTMGGTLNKARAMNASLMALKNAGVEGVMVDAWWGLVEKDGPQKYNWEAYAELVHMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDLIPVLRGRTPLQVYSDFMSSFRDRFRDYLGSVIQEIQVGMGPCGELRYPSYPESNGTWKFPGIGEFQCYDKYMRASLEAAAEAIGNRDWGRSGPHDSGQYNQFPEDTGFFKREGTWNSDYGSFFLNWYSDKLIEHGDRILESAGLIFQSTGAKLSAKIAGIHWHYNTRSHAAELTAGYYNTRFRDGYLPIAQMVAKHGVIFNFTCMEMKDSQQPHHAGCSPEGLVRQVKMATRTARVQLAGENALERYDWDGYGQVLETSRLDCGNGLVSFTYLRMNKRLFEEQNWRQFVEFVRSMSEGGRRQRLPDYDSHGTDLYVAHIKGIQKKKKKHVQDQEVVLV 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1196 619 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 123 583 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 SUPERFAMILY (Trans)glycosidases 151 579 IPR017853 -
Lele55g1196 619 Pfam Glycosyl hydrolase family 14 155 572 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 ProSitePatterns Beta-amylase active site 1. 233 241 IPR018238 GO:0000272|GO:0016161
Lele55g1196 619 Gene3D Glycosidases 145 616 - -
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 321 343 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 207 225 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 467 490 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 449 460 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 186 200 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 432 448 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 504 526 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 229 250 IPR001554 GO:0000272|GO:0016161
Lele55g1196 619 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 396 415 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1196 Lele-ChrLele55 18575011 18577339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1196 68 617 Glycoside Hydrolase AT4G17090 68.280 0.0 791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0292 53 2441637 2443580 Lele55g1196 55 18575011 18577339 hybridization
Lele54g0290 54 2461855 2463797 Lele55g1196 55 18575011 18577339 hybridization