Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0290 ATGGCTTTAACACTTCGTTCTTCAAATTCCCTGTTCTCCCAAATAGAAACCCGAGTTCCCAAACCTTCCGACGACTACTTATCTTCTTCCATCGTTTGCTTCGCAAGGATCAAGCCACAACCACCATCATTCCGTCTCAGAGCAAGCCATGTCCCAGCTGTCGCCGCCGGCAACACTGTTTTGGAGGCGGAGCTGCATCATCCGCCATTGGTGGCTCCTCATAAGCTCGACGACTCGATGAGAGTGCCAGTGTTCGTGATGCTTCCATTAGACACAGTGACGATGGGAGGTACTCTGAACAAAGCTAGAGCCATGAACGCAAGTCTCATGGCTCTGAAAAATGCAGGAGTTGAAGGAGTAATGGTGGACGCTTGGTGGGGTTTAGTTGAAAAAGATGGCCCTCTGAAATATAACTGGGAAGCCTACTCTGAACTTGTTCACATGGTTCAAAAGCATGGATTAAAGCTTCAAGTCGTCATGTCCTTCCATCAATGTGGAGGAAACGTCGGCGATTCTTGCAGTATTCCTCTACCTCCATGGGTGCTTGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCTGGGAGGAGAAATCCTGAGTATATTTCTCTGGGGTGCGATTTGATTCCTGTTCTTAGAGGAAGAACACCTCTTCAGGTTTACTCTGACTTCATGACTAGTTTCAGAGAAAGATTCAGAGATTACTTGGGCCGTGTTATTCAAGAAATTCAAGTAGGGATGGGTCCTTGTGGAGAACTCAGATATTCATCTTATCCAGAAAGTAATGGAACTTGGAGGTTTCCTGGAATTGGTGAATTCCAGTGCTACGACAAGTATATGAGGGCGTCGTTGGAAGCAGCGGCAGAGGCGATAGGGAATAGAGATTGGGGGAGAAGTGGGCCCGACGATTCCGGGCAATACAATCAATTCCCGGAGGACACCGGATTCTTCAGACGTGAAGGAACATGGAACTCCGATTACGGAAGCTTCTTCCTCAACTGGTACTCCGGCAAATTGATCGAACACGGTGACAGGATTCTCGAATCGGCATGCCGGATATTTCAATCCACCGGAGCGAAACTCTCAGCAAAAATCGCCGGCATTCATTGGCATTACAACACAAGATCGCACGCCGCGGAGCTAACCGCCGGCTACTACAACACCCGATTCCGCGACGGATACCTTCCGATTGCACAAACGGTAGCGAAACACGGAGCAATCTTCAACTTCACGTGCATGGAGATGAAGGATTCGCAGCAACCACATCACGCGGGTTGCTCACCGGAGGGACTGGTTCGTCAGGTGAAGACGGCGACGAGGACGGCGAGAGTACAACTCGCCGGCGAGAACGCGTTAGAGAGATACGATTGGGATGGGTACGGACAAGTAATGGAAACGAGCAGATTGGATTGTGGGAACGGATTGGTGTCGTTCACGTATCTGAGAATGAACAAGAGATTGTTCGAAGAACATAATTGGCGGCAATTTGTGGATTTTGTGAGGAGCATGTCGGAAGGTGGTCGGAGACAGAGACTTCCCGATTACGATTCGCATGGAACTGATCTTTACGTTGCACACATAAAAGGGATTCAGAAGGAGAAGCATGTTCATGATCAAGGGGTAGCTCTAGTGTGA 1644 0.4891 MALTLRSSNSLFSQIETRVPKPSDDYLSSSIVCFARIKPQPPSFRLRASHVPAVAAGNTVLEAELHHPPLVAPHKLDDSMRVPVFVMLPLDTVTMGGTLNKARAMNASLMALKNAGVEGVMVDAWWGLVEKDGPLKYNWEAYSELVHMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDLIPVLRGRTPLQVYSDFMTSFRERFRDYLGRVIQEIQVGMGPCGELRYSSYPESNGTWRFPGIGEFQCYDKYMRASLEAAAEAIGNRDWGRSGPDDSGQYNQFPEDTGFFRREGTWNSDYGSFFLNWYSGKLIEHGDRILESACRIFQSTGAKLSAKIAGIHWHYNTRSHAAELTAGYYNTRFRDGYLPIAQTVAKHGAIFNFTCMEMKDSQQPHHAGCSPEGLVRQVKTATRTARVQLAGENALERYDWDGYGQVMETSRLDCGNGLVSFTYLRMNKRLFEEHNWRQFVDFVRSMSEGGRRQRLPDYDSHGTDLYVAHIKGIQKEKHVHDQGVALV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0290 547 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 74 511 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 Pfam Glycosyl hydrolase family 14 85 502 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 ProSitePatterns Beta-amylase active site 1. 163 171 IPR018238 GO:0000272|GO:0016161
Lele54g0290 547 Gene3D Glycosidases 76 539 - -
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 251 273 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 362 378 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 397 420 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 379 390 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 159 180 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 116 130 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 137 155 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 345 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 434 456 IPR001554 GO:0000272|GO:0016161
Lele54g0290 547 SUPERFAMILY (Trans)glycosidases 81 509 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0290 Lele-ChrLele54 2461855 2463797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0290 1 532 Glycoside Hydrolase AT4G17090 68.577 0.0 781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0290 54 2461855 2463797 Lele55g1196 55 18575011 18577339 hybridization
Lele54g0290 54 2461855 2463797 Lele56g1150 56 14944719 14946660 hybridization