Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0292 ATGGCTTTAACACTTCGTTCTTCAAATTCCTTGTTCTCCCGAATAGAAACCCAAGTTCCCAAACCTTCCGACGATTACTCATCTTCTTCCACAGTTTGCTTTGCAAGAATCAAACCACCACCGTCATCACTCCGTCTCAGATCAAGCCATGTCCCAGCTGTCTCCGGCGGAACCACCGGCAACACTGCGGTGGAGTTGGAGCTGCATCATCCGCCATTGGTGACTCCTCATAAGCACGACCAGTCGATGAAAGTGCCGGTGTTCGTGATGCTGCCATTAGACACAGTGACGATGGGAGGAACTCTGAATAAAGCACGAGCCATGAACGCAAGTCTCATGGCTCTGAAAAATGCAGGAGTTGAAGGAGTAATGGTGGACGCTTGGTGGGGTTTAGTTGAAAAAGATGGCCCTCAGAAATATAACTGGGAAGCCTACGCTGAACTTGTTCACATGGTTCAGAAACATGGATTAAAGCTTCAAATCGTCATGTCATTCCATCAATGTGGAGGAAACGTCGGCGACTCCTGCAGTATTCCTCTACCTCCATGGGTGCTTGAAGAAATCAGCAAGAATCCTGACCTGGTTTACACAGACAGATCTGGGAGGAGAAATCCTGAGTATATTTCTTTGGGGTGTGATTTGATTCCTGTTCTTAGAGGAAGAACGCCTCTTCAGGTTTACTCTGACTTCATGACTAGTTTCAGAGACAGATTCAGAGATTACCTGGGCAGTGTTATCCAAGAAATTCAAGTAGGGATGGGTCCTTGTGGTGAACTCAGATATCCATCTTATCCAGAAAGCAATGGAACTTGGAAGTTTCCTGGAATTGGGGAATTCCAGTGTTACGACAAGTATATGAGGGCGTCGTTGGAAGCAGCGGCGGAAGCGATAGGCAATAGAGATTGGGGGAGAAGTGGTCCCCACGATTCCGGCCAATACAATCAATTCCCGGAAGACACTGGATTCTTCAAGCGTGAAGGAACATGGAACTCCGATTACGGAAGCTTCTTCCTCAACTGGTACTCCGACAAATTGATCGAACACGGTGACAGGATTCTCGAATCCGCTAGCCTGATATTCCAATCCACCGGAGCGAAACTCTCAGCCAAAATCGCCGGAATCCATTGGCATTACAACACAAGATCACACGCCGCAGAGCTAACAGCCGGGTACTACAACACTAGATTCCGCGACGGCTACCTACCCATCGCACAAATGGTAGCGAAACACGGAGCGATCTTCAACTTCACGTGCATGGAGATGAAAGATTCACAGCAACCCCATCACGCGGGTTGCTCACCGGAGGGACTGGTTCGTCAGGTGAAGATGGCGACAAGGACGGCGAGAGTGCAACTCGCCGGCGAGAACGCGTTAGAGAGATACGACTGGGATGGGTACGGCCAGGTAATGGAAACTAGCAGATTGGATTGCGGGAATGGATTGGTGTCGTTCACGTATCTGAGGATGAACAAGAGATTGTTCGAAGAACAGAATTGGCGGCAATTTGTGGAATTTGTGAGGAGCATGTCGGAAGGTGGCCGGAGACAGAGACTTCCCGATTACGATTCGCATGGAACTGATCTTTACGTTGCACACATTAAAGGGATTCAGAAGAAGAAGCATGTTCAAGATCAAGAGGTAGTTCTAGTGTGA 1653 0.4858 MALTLRSSNSLFSRIETQVPKPSDDYSSSSTVCFARIKPPPSSLRLRSSHVPAVSGGTTGNTAVELELHHPPLVTPHKHDQSMKVPVFVMLPLDTVTMGGTLNKARAMNASLMALKNAGVEGVMVDAWWGLVEKDGPQKYNWEAYAELVHMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDLIPVLRGRTPLQVYSDFMTSFRDRFRDYLGSVIQEIQVGMGPCGELRYPSYPESNGTWKFPGIGEFQCYDKYMRASLEAAAEAIGNRDWGRSGPHDSGQYNQFPEDTGFFKREGTWNSDYGSFFLNWYSDKLIEHGDRILESASLIFQSTGAKLSAKIAGIHWHYNTRSHAAELTAGYYNTRFRDGYLPIAQMVAKHGAIFNFTCMEMKDSQQPHHAGCSPEGLVRQVKMATRTARVQLAGENALERYDWDGYGQVMETSRLDCGNGLVSFTYLRMNKRLFEEQNWRQFVEFVRSMSEGGRRQRLPDYDSHGTDLYVAHIKGIQKKKHVQDQEVVLV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0292 550 ProSitePatterns Beta-amylase active site 1. 166 174 IPR018238 GO:0000272|GO:0016161
Lele53g0292 550 Gene3D Glycosidases 78 546 - -
Lele53g0292 550 SUPERFAMILY (Trans)glycosidases 84 512 IPR017853 -
Lele53g0292 550 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 75 516 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Plant beta-amylase signature 403 413 IPR001371 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Plant beta-amylase signature 244 253 IPR001371 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Plant beta-amylase signature 485 499 IPR001371 GO:0000272|GO:0016161
Lele53g0292 550 Pfam Glycosyl hydrolase family 14 88 505 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 140 158 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 400 423 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 437 459 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 119 133 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 254 276 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 365 381 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 382 393 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 162 183 IPR001554 GO:0000272|GO:0016161
Lele53g0292 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 329 348 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0292 Lele-ChrLele53 2441637 2443580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0292 1 535 Glycoside Hydrolase AT4G17090 69.613 0.0 790
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0292 53 2441637 2443580 Lele55g1196 55 18575011 18577339 hybridization
Lele53g0292 53 2441637 2443580 Lele56g1150 56 14944719 14946660 hybridization