Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0968 ATGGCGAGGTACGACAGAGCCATTACAGTTTTCTCACCCGATGGCCATCTTTTTCAAGTCGAATACGCCCTTGAAGCTGTTCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACATCGTCGTTCTAGGCGTCGAGAAAAAATCAACCGCCAAACTCCAGGACTCCAGAACAGTGAGAAAGATTGTCAATTTGGATGATCACATTGCCCTTGCTTGTGCAGGACTAAAAGCAGATGCCCGTGTTCTTATAAACAGGGCACGAGTTGAATGTCAAAGCCACAGGCTCACACTTGAGGATCCAGTGACTGTTGAGTACATAACTCGTTACATTGCTGGTCTTCAACAAAAGTACACTCAAAGTGGTGGTGTCCGACCATTTGGTCTTTCAACCTTGATTGTAGGCTTTGATCCATACACTGGTTCACCTTCCCTGTACCAAACAGATCCTTCAGGGACTTTTTCAGCTTGGAAAGCTAATGCTACTGGCAGAAACTCAAATTCAATTCGGGAATTCCTAGAGAAGAACTATAAGGAAACCTCTGGGCAAGAAACTGTAAAACTGGCCATCCGAGCCTTGCTTGAAGTGATATATGATAATGTCGCACCAAAAGCCAAAACTAGTATTGGGTCCACAGTTGCAATTTAG 651 0.4624 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSTAKLQDSRTVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVIYDNVAPKAKTSIGSTVAI 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0968 216 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
Lele55g0968 216 CDD proteasome_alpha_type_7 4 198 - -
Lele55g0968 216 FunFam Proteasome subunit alpha type-4 1 212 - -
Lele55g0968 216 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
Lele55g0968 216 Pfam Proteasome subunit 27 202 IPR001353 GO:0005839|GO:0051603
Lele55g0968 216 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 202 IPR029055 -
Lele55g0968 216 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 214 IPR029055 -
Lele55g0968 216 ProSiteProfiles Proteasome alpha-type subunit profile. 19 216 IPR023332 -
Lele55g0968 216 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Lele55g0968 216 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 8 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0968 Lele-ChrLele55 7292644 7295113 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g0968 55 7292644 7295113 Lele56g0891 56 7487751 7495069 ECH
Lele55g0968 55 7292644 7295113 Lele55g0968 55 7292644 7295113 ECH
Lele54g0543 54 11858353 11862292 Lele55g0968 55 7292644 7295113 hybridization