Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1318 ATGGCCGACGTTCTCTCGGTAGTTCCTGCTTCTGTGCTCCGCAACCTTGCTGACAAACTCTATGAGAAGCGCAAGAATGCTGCTCTTGAGGTTGAGGGGGTTGTGAAGCAGCTCGCTGTTGCTGGGGATCATGAAAAAATCACGGCAGTGATCAATTTGTTGATCACGGAATATACTTTCTCGCCACAAGCAAATCAACGGAAGGGAGGATTGATAGGACTAGCTGCCGCGACAGTTGGGTTGACTAATGAAGCCGCTCAGCATCTTGAGCAAATCGTGCCTCCTGTGTTAAAGTCTTTCTGTGATCAAGATAGCAGAGTTCGTTATTATGCTTGTGAAGCGCTATACAACATTGCTAAGGTTGTGAGAGGGGAATTTATTGTATTCTTTAATCAGATCTTTGATGCCTTATGCAAGCTTTCCACAGACTCAGATGCCAGTGTACAAAGTGCTGCTCATCTCCTGGATCGGCTTGTGAAGGATATTGTGACTGAAAGCGATCAGTTTAGTATTGAAGAATTTATACCATTGTTGAGGGAGCGCATGAATGTCCTGAATCCATATGTTCGTCAGTTTTTGGTTGGATGGATTACTGTGTTGGACAGTGTCCCAGATATTGATATGCTGGGCTTTCTTCCTGATTTTCTTGATGGTTTGTTTAATATGTTGAGTGATTCTAGCCATGAAATTCGTCAGCAAGCTGATTCAGCTCTTTCTGAGTTTCTTCAAGAGATTAAGAACTCCCCATCTGTAGATTATGGTCGCATGGCTGAAATACTGGTTCAGAGGGCACGATCTCCAGATGAATTTACTAGATTAACAGCTATCACATGGATAAATGAGTTTGTCAAACTTGGTGGAGATCAGCTTGTTCCATATTATGCTGATATACTTGGAGCCATTCTTCCTTGCATATCTGATAAAGAAGAGAAAATTCGAGTGGTTGCTCGTGAAACCAATGAAGAACTACGGGCAATCAGGGCTGATCCAGCAGAAGCATTTGATGTAGGAGCAATCCTGTCTGTTGCTAGGAGACAATTGTCAAGTGAATATGAAGCCACTCGAATTGAAGCTCTGCACTGGATATCGACTCTTTTGAACAGATATCGTACTAAGGTTTTGACATTTCTGGATGACATATTTGACACCTTACTGGAAGCACTTTCGGATCCATCCAATGAGGTTGTGCTTCTGGTTCTTGATGTTCATGCATGCATTGCGATGGATCCTCAGCACTTTCGACATCTTGTTGTTTACCTAGTGCACAATTTCCAGGCAGATAATTCTCTTTTGGAGAGGCGTGGTGCTTTGATAATCCGTCGGCTTTGTGTGCTTTTGAATGCTGAAAGAGTCTACCGAGAACTATCTACAATACTGGAAGGGGAATCTGATTTGGATTTTGCATCAATTATGGTTCAGGCTTTAAATTTGATCTTACTCACTTCGTCCGAGTTATCTGAACTTCGAGATCTTTTAAAGCAATCGCTAATAAATCCTGCTGGGAAGGATCTATATGTTTCCTTGTACGCCTCATGGTGCCATTCTCCAATGGCAATTATTAGTCTCTGTTTATTAGCTCAGACGTATCAACATGCGAGTGCTGTGATTCAATCTCTTGTAGAGGAGGATATTAATGTTAAATTTTTGGTTCAACTGGATAAGTTGGTTCGCTTGCTGGAAACTCCAATCTTTGCGTATCTTAGATTGCAGCTTCTTGAACCCGGAAAACATGTATGGTTATTTAAAGCATTATACGGTCTTCTGATGTTGCTTCCTCAGCAAAGTGCCGCCTTCAAGATACTAAAAACTCGTTTGAAAGCCGTGCCGTCATATTCTTTCAACGGTGAACAATTGAAGAGAACATCATCTGGGAATCCTTACCAAATTCTTCATCAAATGTCTGGATCCCAAGCTATTGAGGATGGTGATATGACCTTGGATGGTGGGAAGTCACATAATAATGGAATCAATTTTGCTGCAAGGCTGCAACAGTTTGAGAAAATGCAGTACCAGCATCGCATGCATGCTAAAGCACAAGCCCAGTTGCGCAATAATTCCACATCATTGACAAAGGAGGGTTCCCAATCACAAAGTCAGGAAGAAGAAACGAGGCGATCTCAGTCATCTGAGCTTAATGCTCCTCCTTTAAGATCATCAAAGAAAAGCTCCGGGCAGCAGCAACTATAA 2187 0.4225 MADVLSVVPASVLRNLADKLYEKRKNAALEVEGVVKQLAVAGDHEKITAVINLLITEYTFSPQANQRKGGLIGLAAATVGLTNEAAQHLEQIVPPVLKSFCDQDSRVRYYACEALYNIAKVVRGEFIVFFNQIFDALCKLSTDSDASVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRARSPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIRADPAEAFDVGAILSVARRQLSSEYEATRIEALHWISTLLNRYRTKVLTFLDDIFDTLLEALSDPSNEVVLLVLDVHACIAMDPQHFRHLVVYLVHNFQADNSLLERRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSSELSELRDLLKQSLINPAGKDLYVSLYASWCHSPMAIISLCLLAQTYQHASAVIQSLVEEDINVKFLVQLDKLVRLLETPIFAYLRLQLLEPGKHVWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYSFNGEQLKRTSSGNPYQILHQMSGSQAIEDGDMTLDGGKSHNNGINFAARLQQFEKMQYQHRMHAKAQAQLRNNSTSLTKEGSQSQSQEEETRRSQSSELNAPPLRSSKKSSGQQQL 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1318 728 SUPERFAMILY ARM repeat 6 542 IPR016024 -
Lele54g1318 728 Pfam Vacuolar protein 14 C-terminal Fig4p binding 429 608 IPR021841 -
Lele54g1318 728 Gene3D - 247 417 IPR011989 -
Lele54g1318 728 Pfam Vacuolar 14 Fab1-binding region 65 161 - -
Lele54g1318 728 PANTHER TAX1 BINDING PROTEIN-RELATED 7 690 IPR026825 GO:0006661|GO:0070772
Lele54g1318 728 Gene3D - 1 246 IPR011989 -
Lele54g1318 728 MobiDBLite consensus disorder prediction 708 728 - -
Lele54g1318 728 FunFam protein VAC14 homolog 126 248 - -
Lele54g1318 728 ProSiteProfiles HEAT repeat profile. 92 127 IPR021133 -
Lele54g1318 728 FunFam ARM repeat superfamily protein 6 125 - -
Lele54g1318 728 FunFam protein VAC14 homolog isoform X1 249 410 - -
Lele54g1318 728 MobiDBLite consensus disorder prediction 675 728 - -
Lele54g1318 728 MobiDBLite consensus disorder prediction 678 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1318 Lele-ChrLele54 18262736 18269010 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1318 54 18262736 18269010 Lele55g0135 55 870683 876987 hybridization
Lele54g1318 54 18262736 18269010 Lele56g0135 56 1291830 1298101 hybridization