Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1045 ATGGCTTCTCCTGCAACTTTTCTCAAGCCCATCCAGTGCTGTCTCTCTCCCTGGCACAAGGCTTCAACTTCAAACCATACTTGCAGAAAACAGTTTCGAGTGAGAGCTTCAACCAGTGGTTCAAACGATGGGGAAAGGACGATTATAAGGAAGACAAATGATGGGTGGAAGATCAATTATTCAGGCGAGAAGCCAGAAACGCCATTGCTGGATACAGTCAATTACCCTCTTCATATGAAGAATCTATCCACACAGGATCTTGAACAACTTGCAGCAGAGCTAAGAGCAGATATTGTTTATACTATATCAGATACTGGTGGGCACCTTAGCTCAAGCTTAGGAGTGGTGGAGTTAACAGTGGCCCTGCATCATGTTTTCAACACACCAGAAGATAAGATTATATGGGATGTTGGTCACCAGGGTCTGAGCAGAAAGAAATTGCAGGCATATCCACACAAGATTCTCACAGGTCGAAGGTCCAAGATGCACACCATCAGGAAAACTCGTGGGCTAGCGGGGTTCCCTAAAAGGGATGAAAGTGCTCATGATGCTTTTGGGGTAGGGCACAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCTGTTGGGAGGGATCTATTGGGAAAGAAGAACAGTGTGATCTCAGTGATCGGAGATGGAGCAATGACTGCTGGTCAAGTTTACGAGGCCATGAACAACGCAGGATTTCTTGACGCTAACATGATAGTTATATTGAATGATAACAAGCAAGTCTCTTTACCAACTGCCACACTTGATGGCCCTGCAACCCCAGTTGGAGCACTAAGCAGTGTTTTAATCAAAATGCAAGCGAACACCCAATTCAGAAAACTTAGAGAAGCTGCAAAGAGCATCACAAAGCAAATAGGAAGGCAAACACATGAAGTTGCAGCAAAAGCAGATGAGTATGCAAGAGGAATGATCAGTGCGTCTGGGTCTACACTTTTTGAGGAGCTTGGTTTATATTACATTGGCCCTGTGGATGGTCATAACATAGAAGATCTAGTAAGCATTTTTCAGAAAGTGAAAGCGATGCCTGCCCCAGGTCCTGTTTTGATTCACATTGTGACAGAGAAAGGGAAAGGATACAAGCCAGCAGAGGCAGCAGATGATAAAATGCATGGTGTTGTCAAGTTTGACCCAAAAACTGGGCAACAATTTAAGCCAAAGTCCTCAACACTTTCATATACCCAATACTTTGCTGAATCCTTGATAAAGGAAGCTGAAATAGACAACAAGATAGTAGCCATTCATGGAGCCATGGGTGGAGGAACAGGTCTAAATTATTTCCAGAAAAGGTTTCCAGAACGCTGCTTTGATGTGGGGATAGCAGAACAACACGCTGTTACATTTGCAGCAGGATTAGCCACAGAAGGTCTCAAGCCATTCTGCACTATCTATTCATCATTTCTGCAACGTGGCTATGATCAGGTGGTGCATGATGTAGATCTTCAGAAACTACCTGTCCGCTTCGCTATGGATAGAGCAGGTTTGGTTGGTGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACATACATGGCCTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCAGAACTGATGCACATGGTTGCAACAGCGGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTCCCAAGGGGCAACGGAATTGGAGTTGTTTTGCCCCAAAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATTCTGATAGAAGGCAGCAGGGTTGCTATTTTAGGATACGGTTCTATAGTTCAACAATGTCTTCAAGCAGAAAAAATTCTCCAAAGAGAAGGCGTTTCTGTGACTGTTGCTGATGCTAGGTTCTGCAAACCGTTGGATACTGGTCTCATTCAGCAACTAGCTAAGGAACATGAAATTGTCATCACAGTGGAAGAAGGATCTATTGGAGGTTTTGGATCTCACGTGTCACAATTCCTAAGCTTAGCTGGTATCTTGGATGGACCTTTAAAGTGGAGGCCAATGATGCTTCCTGATAGGTACATCGATCAGGGATCGCCCCAAGATCAGATTGAAGAAGCAGGACTATCATCAAAGCATGTTGCTGCAACAGTCTTGTCTCTTCTGGGCGGGCCAAAGAAAGCTCTTCTGTTCTAG 2160 0.4477 MASPATFLKPIQCCLSPWHKASTSNHTCRKQFRVRASTSGSNDGERTIIRKTNDGWKINYSGEKPETPLLDTVNYPLHMKNLSTQDLEQLAAELRADIVYTISDTGGHLSSSLGVVELTVALHHVFNTPEDKIIWDVGHQGLSRKKLQAYPHKILTGRRSKMHTIRKTRGLAGFPKRDESAHDAFGVGHSSTSISAGLGMAVGRDLLGKKNSVISVIGDGAMTAGQVYEAMNNAGFLDANMIVILNDNKQVSLPTATLDGPATPVGALSSVLIKMQANTQFRKLREAAKSITKQIGRQTHEVAAKADEYARGMISASGSTLFEELGLYYIGPVDGHNIEDLVSIFQKVKAMPAPGPVLIHIVTEKGKGYKPAEAADDKMHGVVKFDPKTGQQFKPKSSTLSYTQYFAESLIKEAEIDNKIVAIHGAMGGGTGLNYFQKRFPERCFDVGIAEQHAVTFAAGLATEGLKPFCTIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGVVLPQNNKGTPLEIGKGRILIEGSRVAILGYGSIVQQCLQAEKILQREGVSVTVADARFCKPLDTGLIQQLAKEHEIVITVEEGSIGGFGSHVSQFLSLAGILDGPLKWRPMMLPDRYIDQGSPQDQIEEAGLSSKHVAATVLSLLGGPKKALLF 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1045 719 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 397 588 IPR029061 -
Lele53g1045 719 Gene3D - 579 711 IPR009014 GO:0003824
Lele53g1045 719 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 24 717 IPR005477 GO:0008661|GO:0016114
Lele53g1045 719 SMART Transket_pyr_3 400 565 IPR005475 -
Lele53g1045 719 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 72 710 IPR005477 GO:0008661|GO:0016114
Lele53g1045 719 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 399 567 - -
Lele53g1045 719 ProSitePatterns Transketolase signature 2. 506 522 IPR020826 -
Lele53g1045 719 SUPERFAMILY TK C-terminal domain-like 574 710 IPR009014 GO:0003824
Lele53g1045 719 Gene3D - 62 372 - -
Lele53g1045 719 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 70 363 IPR005477 GO:0008661|GO:0016114
Lele53g1045 719 Pfam Transketolase, pyrimidine binding domain 400 561 IPR005475 -
Lele53g1045 719 CDD TPP_PYR_DXS_TK_like 406 559 - -
Lele53g1045 719 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 462 IPR029061 -
Lele53g1045 719 CDD TPP_DXS 106 369 IPR005477 GO:0008661|GO:0016114
Lele53g1045 719 Gene3D - 400 569 - -
Lele53g1045 719 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 69 711 IPR005477 GO:0008661|GO:0016114
Lele53g1045 719 Pfam Transketolase, C-terminal domain 579 702 IPR033248 -
Lele53g1045 719 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 579 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1045 Lele-ChrLele53 19784342 19787364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g1045 380 681 Acyl Lipid Metabolism Gene Families AT1G55510 22.823 1.47e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1045 53 19784342 19787364 Lele55g0432 55 2703455 2706064 hybridization
Lele53g1045 53 19784342 19787364 Lele56g0415 56 3106777 3109834 hybridization