Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0432 ATGCACAATGATGTTCGGTTGTTTGCTGATTTGTCTTCTGTGTATGATATGTGCCATCAGGATCTTGAACAACTTGCCGCAGAGCTAAGAGCAGATATTGTTTATACTATATCAGATACTGGTGGGCACCTTAGCTCAAGCTTAGGAGTGGTGGAGTTAACAGTGGCCCTGCATCATGTTTTCAACACACCAGAAGATAAGATTATATGGGATGTTGGTCACCAGGGTCTGAGCAGAAAGAAATTGCAGGCATATCCACACAAGATTCTCACAGGTCGAAGGTCCAAGATGCACACCATCAGGAAAACTCGTGGGCTAGCGGGGTTCCCTAAAAGGGATGAAAGTGTTCATGATGCTTTTGGGGTAGGGCACAGTTCTACAAGCATATCTTCTGGTCTTGGCATGGCTGTTGGGAGGGATCTATTGGGAAAGAACAACAGTGTGATCTCAGTGATCGGAGATGGAGCAATGACTGCTGGTCAAGCTTATGAGGCCATGAACAACGCAGGATTTCTTGATGCTAACATGATAGTTATATTGAATGATAACAAGCAAGTCTCTTTACCAACTGCCACACTTGATGGCCCTGCAACCCCAGTTGGAGCACTAAGCCGTGCTTTAAGCAAAATGCAAGCAAGCACCCAATTTCGAAAACTTAGAGAAGCTGCAAAGTTTGACCCAAAAACTGGGCAACAATTTAAGCCAAAGTCCTCAACACTTTCATATACCCAATACTTTGCTGAATCCTTGATAAAGGAAGCTGAAATAGACAACAAGATAGTGGCCATTAATGCAGCAATGGGTGGAGGAACGGGTCCAAATTATTTCCAGAAAAGGTTTCCAGAACGCTGCTTTGATGTGGGGATAGCTGAACAACACGCTGTTACATTTGCAGCAGGATTAGCCACAGAAGGTCTCAAGCCATTCTGCACTATCTATTCATCATTTCTGCAACGTGGCTATGATCAGGTGGTGCATGATGTAGATCTTCAGAAACTACCTGTCCGCTTCGCTATGGATAGAGCAGGTTTGGTTGGTGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACATACATGGCCTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCAGAACTGATGCACATGGTTGCAACAGCGGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTCCCAAGGGGCAATGGAATTGGAGTTGTTTTGCCCCAAAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATTCTGATAGAAGGCAGTAGGGTTGCTATTTTAGGATACGGTTCTATAGTTCAACAATGTCTTCAAGCAGCAAAAATGCTCCAAAGAGAAGGCGTTTCTGTGACTGTTGTTGATGCTAGGTTCTGCAAACCGTTGGATACTGATCTCATTAAGCAACTAGCTAAGGAACATGAAATTCTCATCACAGTGGAAGAAGGATCTATTGGAGGTTTTGGATCTCACGTGTCACAATTCCTAAGCTTAGCTGGTATCTTGGATGGACCTTTGAAGTGGAGGCCAATGATGCTTCCTGATAGATACATCGATCACGGATCGCCACAAGATCAGATTGAAGAAGTAGGACTATCATCAAAGCATGTTGCTGCAACAGTCGTGTCTCTTCTGGACGGACCGAAAAAAGCTCTTCTGTTCCAGTAA 1683 0.4456 MHNDVRLFADLSSVYDMCHQDLEQLAAELRADIVYTISDTGGHLSSSLGVVELTVALHHVFNTPEDKIIWDVGHQGLSRKKLQAYPHKILTGRRSKMHTIRKTRGLAGFPKRDESVHDAFGVGHSSTSISSGLGMAVGRDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANMIVILNDNKQVSLPTATLDGPATPVGALSRALSKMQASTQFRKLREAAKFDPKTGQQFKPKSSTLSYTQYFAESLIKEAEIDNKIVAINAAMGGGTGPNYFQKRFPERCFDVGIAEQHAVTFAAGLATEGLKPFCTIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGVVLPQNNKGTPLEIGKGRILIEGSRVAILGYGSIVQQCLQAAKMLQREGVSVTVVDARFCKPLDTDLIKQLAKEHEILITVEEGSIGGFGSHVSQFLSLAGILDGPLKWRPMMLPDRYIDHGSPQDQIEEVGLSSKHVAATVVSLLDGPKKALLFQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0432 560 ProSitePatterns Transketolase signature 2. 346 362 IPR020826 -
Lele55g0432 560 Gene3D - 5 243 - -
Lele55g0432 560 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 222 557 IPR005477 GO:0008661|GO:0016114
Lele55g0432 560 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 239 407 - -
Lele55g0432 560 Pfam Transketolase, C-terminal domain 419 542 IPR033248 -
Lele55g0432 560 Gene3D - 244 409 - -
Lele55g0432 560 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 419 551 - -
Lele55g0432 560 SUPERFAMILY TK C-terminal domain-like 414 550 IPR009014 GO:0003824
Lele55g0432 560 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 19 283 IPR029061 -
Lele55g0432 560 Pfam Transketolase, pyrimidine binding domain 240 401 IPR005475 -
Lele55g0432 560 SMART Transket_pyr_3 240 405 IPR005475 -
Lele55g0432 560 Gene3D - 419 551 IPR009014 GO:0003824
Lele55g0432 560 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 231 401 IPR029061 -
Lele55g0432 560 CDD TPP_DXS 41 190 IPR005477 GO:0008661|GO:0016114
Lele55g0432 560 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 14 224 IPR005477 GO:0008661|GO:0016114
Lele55g0432 560 CDD TPP_PYR_DXS_TK_like 246 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0432 Lele-ChrLele55 2703455 2706064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0432 283 521 Acyl Lipid Metabolism Gene Families AT1G55510 22.642 2.08e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1045 53 19784342 19787364 Lele55g0432 55 2703455 2706064 hybridization