Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0415 ATGGCTTTTTCTGCAACTTTCCTCAAGTCCAATCAGTGCTGTCTCTCTCCATGGCACAAGGCTTCGACTTCAAACCATACTTGCACAAAACAGTTTCGAGTGAGAGCTTCAACCAGTGATTCAGAGGATAGGGAAAGGACGATTATAAAGAAGACAAATGATGGGTGGAAGATAAATTATTCAGGCGAGAGGCCAGAAACGCCATTGCTGGATACAGTCAATTATCCTCTTCATATGAAGAATCTATCCACACAGGATCTTGAACAACTTGCAGCAGAGCTAAGAGCAGATATTGTTTATACTGTATCAGGCACTGGTGGTCACCTTAGCTCAAGCTTAGGAGTGGTGGAGTTAACAGTGGCCCTGCATCATGTTTTCAACACCCCAGAAGATAAGATTATATGGGATGTTGGTCACCAGGCATATCCACACAAGATTCTAACAGGTCGAAGGTCCAAGATGCACACAATCAGGAAAACTTGTGGGCTAGCGGGTTTCCCTAAAAGGGATGAAAGTGTTCATGATGCTTTTGGGGTAGGGCACAGCTCTACAAGCATATCTGCCGGTCTTGGCATGGCTGTTGGGAGGGATCTACTGGGAAAGAACAACAGTGTGATCTCAGTGATCGGAGATGGAGCAATGACTGCTGGTCAAGCTTATGAGGCCATGAACAACGCAGGATTTCTTGATGCTAACATGATAGTTATACTGAATGATAACAAGCAAGTCTCTTTACCTACTGCCACACTTGATGGCCCTGCAACTCCAGTTGGAGCACTAAGCAGTGCTTTAAGCAAAATTCAAGCAAGCACCCAATTCAGAAAACTTAGAGAAGCTGCAAAGAGCATCACAAAGCAAATAGGGGGCCAAACACATGAAGTTGCAGCGAAAGTAGATGAGTATGCAAGAGGAATGATCAGTGCGTCGGGGTCTACACTTTTTGAGGAGCTTGGTTTATATTACATTGGCCCTGTGGATGGTCACAACATTGAAGATCTAGTCAGCATTTTCCAGAAAGTGAAAGCGATGCCTGCCCCAGGTCCTGTTTTGATTCACGTTGTGACAGAGAAAGGGAAAGGATACCCCCCAGCAGAGGCAGCAGCTGATAAAATGCATGGTGTTGTCAAGTTTGACCCAAAAACTGGGCAACAATTTAAGCCCAAGTCCTCAACACTTCCATATACCCAATACTTTGCTGAATCCTTGATAAAGGAAGCTGAAATAGACAACAAGATAGTAGCCATTCATGCAGCCATGGGTGGAGGAACGGGTCTAAATTATTTCCAGAAAAGGTTTCCAGAACGCTGCTTTGATGTGGGGATAGCTGAACAACACGCTGTTACATTTGCAGCAGGATTGGCCACAGAAGGTCTCAAGCCATTCTGCACTATCTATTCATCCTTCCTGCAACGTGGCTATGATCAGGTGGTGCATGATGTAGACCTTCAGAAACTACCTGTCCGGTTCGCTATGGATAGAGCCGGTTTGGTTGGTGCAGATGGACCAACCCACTGTGGAGCATTTGATATAACATACATGGCCTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCAGAACTGATGCACATGGTTGCAACAGCGGCATCCATAGATGACAGACCAAGCTGCTTTAGATTCCCTAGGGGCAATGGAATTGGAGTCATTTTGCCCCAAAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGAAGAATTCTGATAGAAGGAAGCAGGGTTGCTATTTTAGGATATGGTTCTATAGTTCAACAATGCCTGCAAGCGGCAAAAATGCTCCAAAGAGAAGGCGTTTCTGTGACTGTTGCTGATGCTAGGTTCTGCAAACCGTTGGATACTGATCTTATTAAGAAACTAGCTAAGGAACATGAAATTCTCATCACAGTGGAAGAAGGATCAATTGGAGGTTTTGGATCTCACGTTTCACAATTCCTAAGCTTAGCTGGTATCTTGGATGGACCTTTAAAGTGTAGGCCAATGATGCTTCCTCATAGATACATCGATCACGGATCGCCACAAGATCAGATTGAAGAAGCTGGACTATCATCAAAGCATATTGCTGCAACAGTCTTGTCTCTTTTGGACAGGCCAAAGAAAGCTCTTCTGTTCAAGTAA 2139 0.4474 MAFSATFLKSNQCCLSPWHKASTSNHTCTKQFRVRASTSDSEDRERTIIKKTNDGWKINYSGERPETPLLDTVNYPLHMKNLSTQDLEQLAAELRADIVYTVSGTGGHLSSSLGVVELTVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSKMHTIRKTCGLAGFPKRDESVHDAFGVGHSSTSISAGLGMAVGRDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANMIVILNDNKQVSLPTATLDGPATPVGALSSALSKIQASTQFRKLREAAKSITKQIGGQTHEVAAKVDEYARGMISASGSTLFEELGLYYIGPVDGHNIEDLVSIFQKVKAMPAPGPVLIHVVTEKGKGYPPAEAAADKMHGVVKFDPKTGQQFKPKSSTLPYTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKRFPERCFDVGIAEQHAVTFAAGLATEGLKPFCTIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAASIDDRPSCFRFPRGNGIGVILPQNNKGTPLEIGKGRILIEGSRVAILGYGSIVQQCLQAAKMLQREGVSVTVADARFCKPLDTDLIKKLAKEHEILITVEEGSIGGFGSHVSQFLSLAGILDGPLKCRPMMLPHRYIDHGSPQDQIEEAGLSSKHIAATVLSLLDRPKKALLFK 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0415 712 Gene3D - 392 560 - -
Lele56g0415 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 454 IPR029061 -
Lele56g0415 712 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 22 709 IPR005477 GO:0008661|GO:0016114
Lele56g0415 712 Gene3D - 63 364 - -
Lele56g0415 712 Pfam Transketolase, C-terminal domain 571 694 IPR033248 -
Lele56g0415 712 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 70 355 IPR005477 GO:0008661|GO:0016114
Lele56g0415 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 389 580 IPR029061 -
Lele56g0415 712 SMART Transket_pyr_3 392 557 IPR005475 -
Lele56g0415 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 571 703 - -
Lele56g0415 712 CDD TPP_PYR_DXS_TK_like 398 551 - -
Lele56g0415 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Lele56g0415 712 SUPERFAMILY TK C-terminal domain-like 566 702 IPR009014 GO:0003824
Lele56g0415 712 Gene3D - 571 703 IPR009014 GO:0003824
Lele56g0415 712 Pfam Transketolase, pyrimidine binding domain 392 553 IPR005475 -
Lele56g0415 712 ProSitePatterns Transketolase signature 2. 498 514 IPR020826 -
Lele56g0415 712 CDD TPP_DXS 106 361 IPR005477 GO:0008661|GO:0016114
Lele56g0415 712 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 72 702 IPR005477 GO:0008661|GO:0016114
Lele56g0415 712 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 69 703 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0415 Lele-ChrLele56 3106777 3109834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0415 435 650 Acyl Lipid Metabolism Gene Families AT1G55510 22.807 1.64e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1045 53 19784342 19787364 Lele56g0415 56 3106777 3109834 hybridization