Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0071 ATGAGTTCTGTGAATCTTGGTTCATGGGCTCGCCCCAGTTCTATGTTCGCCCAGGTCAGCAGATCCAGATCCCCAACTTTTCATATCTTCAATGGTCTCAGAACATTACCCATTTCCTTCCTCCCTTCAAAACCCCCCACCCATGGAGTCTCTTCCTCTTCTTTCTCTTCCTTTTCCGTCGCTGCTGTGCTCACCAAGGAAACCGCCGTTACGGATTCCGAGGAGGAGAAGCCCGGTTTCAATTTTAACGCTTACATGCTTGAGAAGGCTAATAGGGTGAACCAAGCCTTGGATGCGGCTATTGCCATGAGAGAGCCCGAGAAGATTCACGAGGCCATGCGGTACTCGCTTCTCGCCGGCGGCAAGCGGGTGCGCCCAATGCTCTGTATCGCCGCCTGCGAACTCGTTGGCGGCCACGAATCAGTGGCCATGCCCTCGGCTTGCGCCGTCGAGATGATTCATACTATGTCACTGATTCACGACGACTTGCCCTGTATGGATAACGACGATCTGCGGCGAGGGAAACCGACGAATCACAAGGTCTTCGGGGAGGACGTCGCGGTTTTGGCGGGCGATGCTCTTCTGTCATTCGCTTTCGAGCACGTTGCCGTTGCCACCGTGGGCGTGGCGCCGGCGAGGATAGTTCGCGCGGTAGGGGAGTTAGCGAAGTCGATTGGAGCCGAAGGGCTTGTGGCAGGGCAAGTTGTGGATATAGCCTCGGAGGGATTGTCCGGGGTGGGGTTGGAGAAGCTGGAATTCATTCATCTTCACAAAACGGCGGCGTTGTTGGAAGCGGCGGTTGTGCTGGGAGCAATCGTGGGAGGTGGGTCGGACGAAGAGGTTGAGAAATTGAGGAACTTCGCGAGGTACATCGGATTGCTGTTTCAGGTCGTGGATGACATTCTTGACGTTACCAAATCGTCGGAGGAATTGGGGAAAACGGCAGGCAAGGACTTGGTGGCTGATAAGACGACGTATCCGAAACTTCTGGGGTTGGAGAAATCGAGGGAGTTCGCTGAGAAATTGAACAAGGATGCGCAAGACCAGCTTTCTGGGTTTGATCCGGAGAAAGCTACTCCATTAATTGCTTTGGCGAATTACATTGCTTACAGGCAGAACTAG 1122 0.541 MSSVNLGSWARPSSMFAQVSRSRSPTFHIFNGLRTLPISFLPSKPPTHGVSSSSFSSFSVAAVLTKETAVTDSEEEKPGFNFNAYMLEKANRVNQALDAAIAMREPEKIHEAMRYSLLAGGKRVRPMLCIAACELVGGHESVAMPSACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHVAVATVGVAPARIVRAVGELAKSIGAEGLVAGQVVDIASEGLSGVGLEKLEFIHLHKTAALLEAAVVLGAIVGGGSDEEVEKLRNFARYIGLLFQVVDDILDVTKSSEELGKTAGKDLVADKTTYPKLLGLEKSREFAEKLNKDAQDQLSGFDPEKATPLIALANYIAYRQN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0071 373 ProSitePatterns Polyprenyl synthases signature 2. 291 303 IPR033749 -
Lele53g0071 373 SFLD Polyprenyl Transferase Like 84 371 - -
Lele53g0071 373 SFLD Isoprenoid Synthase Type I 84 371 - -
Lele53g0071 373 CDD Trans_IPPS_HT 105 371 IPR000092 GO:0008299
Lele53g0071 373 SUPERFAMILY Terpenoid synthases 83 355 IPR008949 -
Lele53g0071 373 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 53 373 - -
Lele53g0071 373 Coils Coil 329 349 - -
Lele53g0071 373 FunFam Geranylgeranyl diphosphate synthase 79 373 - -
Lele53g0071 373 Pfam Polyprenyl synthetase 107 343 IPR000092 GO:0008299
Lele53g0071 373 ProSitePatterns Polyprenyl synthases signature 1. 158 174 IPR033749 -
Lele53g0071 373 Gene3D Farnesyl Diphosphate Synthase 74 373 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0071 Lele-ChrLele53 563484 564605 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0210 50 1239083 1244947 Lele53g0071 53 563484 564605 CCT
Lele51g0212 51 1190991 1192109 Lele53g0071 53 563484 564605 CCT
Lele52g0213 52 1262507 1266974 Lele53g0071 53 563484 564605 CCT
Lele53g0071 53 563484 564605 Lele53g0071 53 563484 564605 ECH
Lele53g0071 53 563484 564605 Lele54g0074 54 610892 612013 ECH
Lele53g0071 53 563484 564605 Lele55g1426 55 20503171 20504292 hybridization
Lele53g0071 53 563484 564605 Lele56g1358 56 16737834 16738955 hybridization