Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1666 ATGGATCCCAAGGCTCCGCGCTTCATTAGCCACCAGTCCATTTTCTCAATAGTTCGATCTGGGGACTTGGGTGTGCTGAAGAAACTCCTGGAGCAGCTTAATAGAGAAGATACTTCCTCGTTTTCTAATGTCATGTCCCTTCAGAACGATGCCGGAGAGACGGCGTTGTACATCGCCGCCGAGCATAATCTGGCTGAAATTTTCGGCTACTTGCTCAGCTACTGTGACTTGGAGATTGTGAAGATCAGGTCCAAATCCGACATGAATGCCTTCCATGTTGCCGCCAAGCGTGGTCATCTAGATATTGTGAAGGAGTTTTTGAACAAGGTGCCTGAGGTTTGTAAGTTGTGCGACTCCTCAAACACTAGCCCCCTATATTTAGCTGCTGCTCAAGACCATTTGGATGTGGTGAATGCTATCTTGGATGTTGATGTCGATTCAACGAGGATAGTTAGAAAAAATGGAAAAACTGCGTTGCACAATGCTGCTAGGTACGGTCTTCTTCGTATTGCGAAAGCGCTTATTGACCGAGATCAAGGAATAGTCTGTGTCAAAGATAAAAAGGGGCAAACTGCACTGCATATGGCTGTAAAAGGACAGTGTCCTTCAGTGGTAGAGGAGATACTACAAGCTGATTCCACTATATTGAATGAACGAGATAAGAAGGGAAATACTGCCTTACACATGGCTACAAGGAAGGGTCGTTCCCAGCAAAATAAAGTAATGTTTCTTGCAAAGATTTTTCTTGTTCTTCCCTTATTTCTTCTTCATACTGACACATTTCTCTTTGTTCAGATTGTGAGTCTTCTGCTAAGTTGCACAGCTATGGATGTCAATGCCATCAATAACCAGAAGGAAACAGCGTTGGATTTGGCAGATAAATTGCAGTATGGGGATTCAGCTTTGGAAATCAAGGAGGCCCTTGCAGACTGTGGTGCCAAGTACGCCAGGCATGTTGGCAAAGTTGATGAAGCTATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAAGTGCAGTCACAACTTGAAGCAAACTTGAAAACTCGCCGGCGAGTTTCCGGTATTGCAAAAGAATTGAAAAAGCTTCACAGAGAAGCAGTTCAAAATACAATTAACTCTGTCACAGTTGTTGCTGTCCTTTTTGCCTCAGTAGCATTCTTGGCTATATTCAATTTGCCTGGCCAATATATCATGCAAGGACCTGAGACTGGGAAGGCTAATATAGCTGATAGTGTTGCTTTCCAAGCTTTCTGTCTCTTAAACTCTACATCTCTTTTCATCTCTCTATCGGTGGTGGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGGTTGTGTCAGTGGTTAACAAGCTGATGTGGGCTGCTGGCACTTGCACGTGTGGCGCTTTTCTGGCTTTGGCATTTGTTGTAGTTGGAAGAAAGCAAACATGGATGGCTATTACCATAACCATGTTGGGTGTACCCACCATAGTTGGAACTCTAGCATGCCTATGCTACTTTGTTTTCCAGCAACATTTTGGCATTTTCCGCAGCGATTCCCAGAGACGCATCAAGAGAGCTAGTGGGAGCAAATCTTTCTCTTGGTCCTACTCTGCAAATATATCTGAATTGGATGATTATGATTCTGACTTTGAGAAAATATATGCTCTGTAA 1671 0.4351 MDPKAPRFISHQSIFSIVRSGDLGVLKKLLEQLNREDTSSFSNVMSLQNDAGETALYIAAEHNLAEIFGYLLSYCDLEIVKIRSKSDMNAFHVAAKRGHLDIVKEFLNKVPEVCKLCDSSNTSPLYLAAAQDHLDVVNAILDVDVDSTRIVRKNGKTALHNAARYGLLRIAKALIDRDQGIVCVKDKKGQTALHMAVKGQCPSVVEEILQADSTILNERDKKGNTALHMATRKGRSQQNKVMFLAKIFLVLPLFLLHTDTFLFVQIVSLLLSCTAMDVNAINNQKETALDLADKLQYGDSALEIKEALADCGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLEANLKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASVAFLAIFNLPGQYIMQGPETGKANIADSVAFQAFCLLNSTSLFISLSVVVVQITLVAWDTRAQKQVVSVVNKLMWAAGTCTCGAFLALAFVVVGRKQTWMAITITMLGVPTIVGTLACLCYFVFQQHFGIFRSDSQRRIKRASGSKSFSWSYSANISELDDYDSDFEKIYAL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1666 556 Gene3D - 7 179 IPR036770 -
Lele52g1666 556 Gene3D - 180 303 IPR036770 -
Lele52g1666 556 SUPERFAMILY Ankyrin repeat 14 298 IPR036770 -
Lele52g1666 556 ProSiteProfiles Ankyrin repeat region circular profile. 154 177 - -
Lele52g1666 556 SMART ANK_2a 120 149 IPR002110 GO:0005515
Lele52g1666 556 SMART ANK_2a 154 183 IPR002110 GO:0005515
Lele52g1666 556 SMART ANK_2a 222 253 IPR002110 GO:0005515
Lele52g1666 556 SMART ANK_2a 51 79 IPR002110 GO:0005515
Lele52g1666 556 SMART ANK_2a 86 115 IPR002110 GO:0005515
Lele52g1666 556 SMART ANK_2a 188 217 IPR002110 GO:0005515
Lele52g1666 556 ProSiteProfiles Ankyrin repeat profile. 154 177 IPR002110 GO:0005515
Lele52g1666 556 Pfam Ankyrin repeats (3 copies) 91 177 IPR002110 GO:0005515
Lele52g1666 556 Pfam Ankyrin repeats (many copies) 191 237 IPR002110 GO:0005515
Lele52g1666 556 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 535 - -
Lele52g1666 556 Pfam Domain of unknown function 366 475 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1666 Lele-ChrLele52 20308788 20311546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1666 1 556 Miscellaneous Gene Families AT2G01680 64.956 0.0 706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1666 52 20308788 20311546 Lele52g1666 52 20308788 20311546 ECH
Lele49g1133 49 7505644 7508270 Lele52g1666 52 20308788 20311546 hybridization
Lele50g1706 50 21905843 21908583 Lele52g1666 52 20308788 20311546 hybridization