Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1706 ATGGATCCCAAGGCTCTGCGCTTCATTAGGTACCAGTCCATTTTCTCAATAGTTCGATCTGGGGACTTGGGTAAGCTGAAGCAACTCCTGGAGCAGCTTAATAGCGAAGAGGCTTCGTCGTTTTCTAATGTCATGTCCCTTCAGAACGATGCCGGAGAGACGGCGTTGTACATCGCCGCAGAGCATAATCTGGCTGAAATTTTCGGCTACTTGCTCAACTACTGTGACTTGGAGATTGTGAAGATCAGGTCCAAATCCGATATGAATGCCTTCCATGTTGCCGCCAAGCGTGGTCATCTAGATATTGTGAGAGAGTTTTTGAACAAGGTGCCTGAGGTTTGTAAGTTGTGCGACTCCTCAAACACTAGTCCCCTATATTTAGCTGCTGCTCAAGACCATTTGGATGTGGTGAATGCTATCTTGGATGTTGATGTCGATTCAATGAGGATAGTTAGAAAAAATGGAAAAACTGCGTTGCACAATGCTGCTAGGTACGGTCTTCTTCGAATTGCGAAAACGCTTATTGACCGAGATCAAGGAATAGTCTGTGTCAAAGATAAAAAGGGTCAAACTGCACTGCATATGGCTGTAAAAGGACAGTGTCCTTCAGTGGTAGAGGAGATACTACAAGCTGATTCCACTATATTGAATGAACGAGATAAGAAGGGAAATACTGCCTTACACATGGCTACAAGGAAGGGTCGTTCCCAGATTGTGAGTCTTCTGCTAAGTTGCACAGCTATGGATGTCAATGCCATCAATAACCAGAAGGAAACTGCGTTGGATTTGGCAGATAAATTGCAGTATGGGGATTCAGCTTTGGAAATCCAGGAGGCCCTTGCAGACTGTGGTGCCAAGTACGCCAGGCATGTTGGCAAAGTTGATGAAGCTATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAAGTGCAGTCACAACTTGAAGCAAACTTAAAAACTCGCCGGCGAGTTTCCGGTATTGCAAAAGAATTGAAAAAGCTTCACAGAGAAGCAGTTCAAAACACAATTAACTCTGTCACAGTTGTTGCTGTCCTTTTTGCCTCAGTAGCATTCTTGGCTATATTCAATTTGCCTGGCCAATATATCATGCAAGGGCCTGAGACTGGGAAGGCTAAAATAGCTGATAGTGTTGCTTTCCAAGCTTTCTGTCTTTTAAACTCTACATCTCTTTTCATCTCTCTATCAGTGGTGGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGGTTGTGTCAGTGGTTAACAAGCTGATGTGGGCTGCCGGCACTTGCACGTGTGGTGCTTTTCTGGCTTTGGCATTTGTTGTTGTTGGAAGAAAGCAAACATGGATGGCTATTACCATAACCATTTTGGGTGTACCCACCATAGTTGGAACTCTAGCATGCCTATGCTACTTTGTTTTCCAGCAACATTTTGGCATTTTCCGCAGCGATTCCCAGAGACGCATCAAGAGAGCAAGTGGGAGCAAATCTTTCTCTTGGTCCTACTCTGCAAATATGTCTGAATTGGATGATTATGATTCTGACATTGAGAAAATATATGCTCTGTAA 1587 0.4386 MDPKALRFIRYQSIFSIVRSGDLGKLKQLLEQLNSEEASSFSNVMSLQNDAGETALYIAAEHNLAEIFGYLLNYCDLEIVKIRSKSDMNAFHVAAKRGHLDIVREFLNKVPEVCKLCDSSNTSPLYLAAAQDHLDVVNAILDVDVDSMRIVRKNGKTALHNAARYGLLRIAKTLIDRDQGIVCVKDKKGQTALHMAVKGQCPSVVEEILQADSTILNERDKKGNTALHMATRKGRSQIVSLLLSCTAMDVNAINNQKETALDLADKLQYGDSALEIQEALADCGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLEANLKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASVAFLAIFNLPGQYIMQGPETGKAKIADSVAFQAFCLLNSTSLFISLSVVVVQITLVAWDTRAQKQVVSVVNKLMWAAGTCTCGAFLALAFVVVGRKQTWMAITITILGVPTIVGTLACLCYFVFQQHFGIFRSDSQRRIKRASGSKSFSWSYSANMSELDDYDSDIEKIYAL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1706 528 Gene3D - 6 142 IPR036770 -
Lele50g1706 528 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 507 - -
Lele50g1706 528 SMART ANK_2a 120 150 IPR002110 GO:0005515
Lele50g1706 528 SMART ANK_2a 222 252 IPR002110 GO:0005515
Lele50g1706 528 SMART ANK_2a 154 183 IPR002110 GO:0005515
Lele50g1706 528 SMART ANK_2a 86 115 IPR002110 GO:0005515
Lele50g1706 528 SMART ANK_2a 51 79 IPR002110 GO:0005515
Lele50g1706 528 SMART ANK_2a 188 217 IPR002110 GO:0005515
Lele50g1706 528 SUPERFAMILY Ankyrin repeat 14 270 IPR036770 -
Lele50g1706 528 ProSiteProfiles Ankyrin repeat region circular profile. 222 244 - -
Lele50g1706 528 Pfam Domain of unknown function 338 447 IPR026961 -
Lele50g1706 528 Pfam Ankyrin repeats (3 copies) 146 211 IPR002110 GO:0005515
Lele50g1706 528 Pfam Ankyrin repeats (3 copies) 87 142 IPR002110 GO:0005515
Lele50g1706 528 ProSiteProfiles Ankyrin repeat region circular profile. 154 177 - -
Lele50g1706 528 ProSiteProfiles Ankyrin repeat profile. 154 177 IPR002110 GO:0005515
Lele50g1706 528 Gene3D - 143 305 IPR036770 -
Lele50g1706 528 Pfam Ankyrin repeat 223 255 IPR002110 GO:0005515
Lele50g1706 528 ProSiteProfiles Ankyrin repeat profile. 222 244 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1706 Lele-ChrLele50 21905843 21908583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1706 1 528 Miscellaneous Gene Families AT2G01680 67.784 0.0 716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1706 50 21905843 21908583 Lele50g1706 50 21905843 21908583 ECH
Lele50g1706 50 21905843 21908583 Lele51g1153 51 7610251 7612863 hybridization
Lele50g1706 50 21905843 21908583 Lele52g1666 52 20308788 20311546 hybridization