Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1133 ATGGATCCCAAGGCTCTGCGATTCATAAGGTGCCAGTCCATTTTCTCAATAGTTCGATCTGGGAACTTGTCGGAGCTGAAGCGACTCCTGGAGCAGCTTAACAGCAAAGATGCTTTGTCGTCTTCTAATGTGATGTCCCTTCAGAACGATGCCGGAGAGACGGCGCTGTACATCGCTGCCGAGCATAATCTGGCTGAAATTTTTCGCTACTTGCTCAACTACTGTGACTTGGAGATTGTGAAGATCAGGTCCAGATCCGACATGAATGCCTTCAATGTTGCCGCCAAGCGTGGTCATCTAGATATTGTGAAAGAGTTTTTGAACAAGGTGCCTGAGGTTTGTAAGTTGTGTGACTCCTCAAACACTAGTCCACTATATTCAGCTGCTGTTCAAGACCATTTGGATGTGGTGAATGCTATCTTGGATGTTGATGTCGATTCAATGTGGATAGTTAGGAAAAATGGAAAAACTGCGTTGCACAATGCTGCTAGGTATGGGGTTCTTCGTATTGTGAAAGCGCTTATTGAACGAGATCGAGGAATAGTCTGTGTCAAAGATAAAAAGGGTCAAACTGCACTGCATATGGCTGTAAAAGGACAGTGTCCTTTAGTGGTAAAGGAGATATTACAAGCTGATTCCACGATATTGAATGAACGAGATAAGAAGGGAAATACTGCTTTGCACATGGCTACAAGGAAGGGTCGTTCCGAGATTGTGAGTCTTCTGCTAAGTTGCACAGCTATGGACATCAATGCCATCAATAACCAGCAGGAAACAGCGTTCGATTTGGCAGATAAATTGCAGTATGGGGATTCCGCTTTGGAAATCAAGGAGGCCCTTGCAGACTGTGGGGCCAAGTACGCCAGGCATGTTGGCAAAGTTGATGAAGCTATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAAGTGCAGTCACAACTTGAGGCAAACTTAAAAACTCGTAGGCGAGTTTCTGGTATTGCTAAAGAATTGAAAAAGCTTCACAGAGAAGCAGTTCAAAACACAATTAACTCTGTCACAGTTGTTGCTGTCCTTTTTGCCTCAGTAGCATTCTTGGCTATATTCAATTTGCCTGGCCAATATATCATGCAAGGACCTGAGACTGGGAAGGCTAATATAGCTGATAATGTTGCTTTCCAAGCTTTCTGTCTTTTAAACTCTACTTCTCTTTTCATCTCTCTATCAGTGGTGGTTGTTCAAATCACTTTGGTAGCCTGGGACACAAAGGCTCAAAAGCAGGTTGTGTCAGTGGTTAATAAGCTAATGTGGGCCGCCGGTGCTTGCACGTGTGGGGCTTTTCTGGCTTTGGCATTTGTTGTTGTTGGAAGAAAGCAAACATGGATGGCTATTACCATAACCATTTTGGGTGTACCCACAATAGTTGGAACTCTAGCATGCCTATGCTACTTTGTTTTCCAGCAGCATTTTGGCATTTTCCGCAGCGATTCCCAGAGACGCATCAAGAGAGCAAGTGGGAGCAAATCTTTCTCTTGGTCCTACTCTGCCAATATATCTGAATTGGATGATTACGATTCTGACATTGAGAAAATATATGCTCTGTAA 1587 0.436 MDPKALRFIRCQSIFSIVRSGNLSELKRLLEQLNSKDALSSSNVMSLQNDAGETALYIAAEHNLAEIFRYLLNYCDLEIVKIRSRSDMNAFNVAAKRGHLDIVKEFLNKVPEVCKLCDSSNTSPLYSAAVQDHLDVVNAILDVDVDSMWIVRKNGKTALHNAARYGVLRIVKALIERDRGIVCVKDKKGQTALHMAVKGQCPLVVKEILQADSTILNERDKKGNTALHMATRKGRSEIVSLLLSCTAMDINAINNQQETAFDLADKLQYGDSALEIKEALADCGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLEANLKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASVAFLAIFNLPGQYIMQGPETGKANIADNVAFQAFCLLNSTSLFISLSVVVVQITLVAWDTKAQKQVVSVVNKLMWAAGACTCGAFLALAFVVVGRKQTWMAITITILGVPTIVGTLACLCYFVFQQHFGIFRSDSQRRIKRASGSKSFSWSYSANISELDDYDSDIEKIYAL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1133 528 Gene3D - 8 146 IPR036770 -
Lele49g1133 528 Gene3D - 147 304 IPR036770 -
Lele49g1133 528 Pfam Ankyrin repeats (3 copies) 87 142 IPR002110 GO:0005515
Lele49g1133 528 Pfam Ankyrin repeats (3 copies) 188 252 IPR002110 GO:0005515
Lele49g1133 528 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 507 - -
Lele49g1133 528 SUPERFAMILY Ankyrin repeat 14 270 IPR036770 -
Lele49g1133 528 SMART ANK_2a 51 79 IPR002110 GO:0005515
Lele49g1133 528 SMART ANK_2a 188 217 IPR002110 GO:0005515
Lele49g1133 528 SMART ANK_2a 86 115 IPR002110 GO:0005515
Lele49g1133 528 SMART ANK_2a 222 252 IPR002110 GO:0005515
Lele49g1133 528 SMART ANK_2a 154 183 IPR002110 GO:0005515
Lele49g1133 528 SMART ANK_2a 120 149 IPR002110 GO:0005515
Lele49g1133 528 Pfam Domain of unknown function 338 447 IPR026961 -
Lele49g1133 528 ProSiteProfiles Ankyrin repeat region circular profile. 222 244 - -
Lele49g1133 528 ProSiteProfiles Ankyrin repeat profile. 154 177 IPR002110 GO:0005515
Lele49g1133 528 Pfam Ankyrin repeat 154 176 IPR002110 GO:0005515
Lele49g1133 528 ProSiteProfiles Ankyrin repeat profile. 222 244 IPR002110 GO:0005515
Lele49g1133 528 ProSiteProfiles Ankyrin repeat region circular profile. 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1133 Lele-ChrLele49 7505644 7508270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1133 1 528 Miscellaneous Gene Families AT2G01680 67.412 0.0 713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1133 49 7505644 7508270 Lele49g1133 49 7505644 7508270 ECH
Lele49g1133 49 7505644 7508270 Lele51g1153 51 7610251 7612863 hybridization
Lele49g1133 49 7505644 7508270 Lele52g1666 52 20308788 20311546 hybridization