Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1600 ATGGTGGGAAGTGCTATAGCAGATCCTCCAAACTTCAAGAAATACGGCGTTCCTTCCTACTCAGTCGCATGGATACCTCCAAATGTCATCAAATCAGTATTGAATCAAACAACTGTTGAAGCCGCTGACAACGCTGACAGCTCCACGCCTCAGCCACCCGAGCAGTCCGGCGAGCACTACCTTGTGATCGCTGGTGGTGGTGGTGAAGGAAGCAGCGGTATTCCTAATGCTGTGTTGCTTGCACATTTTGATGTCGCATCTAATTCTCTCTCTGATCAGCCAGTGGGCAGGCTTAGAACTGGTTCTGAGCTGCCTTATAGAATGGCACTTCACCCCGGTGGAGATGGCCTTATTTGTGCGATGCCAAAGAGTTGCAGATGGTTTGAATGGGACCAAAATAGGAGTGCAAAAAGTCATAAGTTAGGTCTGAAGGTTTCTGATAAAGTACTCAGTGAGTTGGAGGATGTTGGGCAGCAGTTAGCTCTGGCATTTGACAATGATGGCACTATGCTAGCTGTTGGCGGGGAGGATGGCAATCTGAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTCTCAATGAGACTAAAGCTTATTCGACAGTAAAAGACTTACATTTCAGTTCTGATGGTAAACTGCTTGTCTCTTTGGGAAGTGGTGGGCCGTGCAGAGTTTGGGATGTTTCCTCATCAACGGTCTTAATTTCCATATCAAGTAAAAAGGGTGAGATTTTTAGCTCTTGCAGATTTTCTCAAATTAATGATGGGACCCATGTCTTGTATATTGCTGCCATGACAGACAAAGGTGGAAGCATTCTGACATGGGATGCAAAAACTGGGGCAAGGATTGGCTCAAAGCATATTACTCGTGACGCAATCTCTGCATTCAATGTCTCAACTGATGGAAAGTTAGTTGCATGTGGAACACCTTCAGGAGACATTATGATTGTAAATTCAACAAATACGAAGATTCTGTCAATGATTAAAAAGGCTCACCTTGGCATAGTAACTGCGTTAGCTTTTTCCCATGATTCAAGGGCGTTGGCTTCTGTATCCTTTGATTCAAGTGCAAGGGTCACTCTAATTGAGGAGAAGCAGAAGATTGGAGGATTGAGCTTATGGATTGCTGTACTTTTCATCATACTTGCAATTATAGCTGCCTACTTTCTGAAACTTCAAGACATTGACAAGTTGAAGTTATCTTTTCTTCAAAATTGA 1215 0.437 MVGSAIADPPNFKKYGVPSYSVAWIPPNVIKSVLNQTTVEAADNADSSTPQPPEQSGEHYLVIAGGGGEGSSGIPNAVLLAHFDVASNSLSDQPVGRLRTGSELPYRMALHPGGDGLICAMPKSCRWFEWDQNRSAKSHKLGLKVSDKVLSELEDVGQQLALAFDNDGTMLAVGGEDGNLRVFKWPSMEIILNETKAYSTVKDLHFSSDGKLLVSLGSGGPCRVWDVSSSTVLISISSKKGEIFSSCRFSQINDGTHVLYIAAMTDKGGSILTWDAKTGARIGSKHITRDAISAFNVSTDGKLVACGTPSGDIMIVNSTNTKILSMIKKAHLGIVTALAFSHDSRALASVSFDSSARVTLIEEKQKIGGLSLWIAVLFIILAIIAAYFLKLQDIDKLKLSFLQN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1600 404 FunFam SEC12-like protein 2 53 365 - -
Lele52g1600 404 SMART WD40_4 278 317 IPR001680 GO:0005515
Lele52g1600 404 SMART WD40_4 146 184 IPR001680 GO:0005515
Lele52g1600 404 SMART WD40_4 320 360 IPR001680 GO:0005515
Lele52g1600 404 SMART WD40_4 191 226 IPR001680 GO:0005515
Lele52g1600 404 MobiDBLite consensus disorder prediction 42 61 - -
Lele52g1600 404 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 13 389 IPR045260 GO:0005085
Lele52g1600 404 Pfam WD domain, G-beta repeat 161 183 IPR001680 GO:0005515
Lele52g1600 404 Gene3D - 54 367 IPR015943 GO:0005515
Lele52g1600 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 235 IPR001680 GO:0005515
Lele52g1600 404 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 59 358 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1600 Lele-ChrLele52 19895072 19899426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1600 160 307 Miscellaneous Gene Families AT5G08390 26.846 2.58e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1600 52 19895072 19899426 Lele52g1600 52 19895072 19899426 ECH
Lele49g1196 49 7937343 7948510 Lele52g1600 52 19895072 19899426 hybridization
Lele50g1645 50 21499094 21503439 Lele52g1600 52 19895072 19899426 hybridization