Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1645 ATGGTGGGAAGTGCTGTAGCAGATCCTCCAAACTTCAAGAAATACGGCGTTCCTTCCTACTCAGTCGCATGGATACCTCCAAATGTCATCAAATCAGTATTGAATCAAACAACTGTTGAAGCCTCTGACAACGCTGACAGCTCCACGCCTCAGCCACCCGAGCAGTCCGGCGAGCACTACCTTGCGATCACTGGTGGTGGTGGTGAAGGAAGCAGCGGTATTCCTAATGCTGTGTTGCTTGCACATTTTGATGTCGCATCTAATTCTCTCTCTGATCAGCCAGTGGGCAGGCTTGGAACTGGTTCTGAGCTGCCTTATAGAATGGCTCTTCACCCCGGGGGAGATGGCCTTATTTGTGCGATGCCAAAGAGTTGCGGATGGTTTGAATGGGACCAAAACTGGAGTGCAAAAAGTCACGAGTTAGGTCAGAAGGTTTCTGATAAAGTACTCAGTGAGTTGGAGGATGTTGGGCAGCAGTTAGCTCTAGCATTTGACAATGATGGCACTATGCTAGCTGTTGGCGGGGAGGATGGCAATCTGAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTCTCAATGAGACTAAAGCTTATTCTACAGTAAAAGACTTACATTTCAGCTCTGATGGTAAACTGCTTGTCTCTTTGGGAAGTGGTGGGCCGTGCAGAGTTTGGGATGTTTCCTCATCAACGGTCTTAATTTCCATATCAAGTAAAAAGGGTGAGATTTTTAGCTCTTGCAGATTTTCTCAAATTAATGATGGAACCCATGTCTTGTATATTGCTGCCATGACAGACAAAGGTGGAAGCATTCTGACATGGGATGCAAAAACTGGGGCAAGGATTGGCTCAAAGCATATTACTCGTGACGCAATCTCTGCATTCAATGTCTCAACTGATGGAAAGTTAGTTGCATGTGGAACACCTTCAGGAGACATTATGATTGTAAATTCAACAAATACTAAGATTCTGTCAATGATTAAAAAGGCTCACCTTGGCATAGTAACTGCGTTAGCGTTCTCCCATGATTCAAGGGCGTTGGCTTCTGTATCCTTTGATTCAAGCGCAAGGGTCACTCTAATTGAGGAGAAGCAGAAGAGTGGAGGATTGAGCTTATGGATTGCTGTACTTTTCATCATACTTGGAATTATAGCTGCCTACTTCCTGAAACTTCAAGACATTGACAAGTTGAAGTTATCTTTTCTTCAAAATTGA 1215 0.4436 MVGSAVADPPNFKKYGVPSYSVAWIPPNVIKSVLNQTTVEASDNADSSTPQPPEQSGEHYLAITGGGGEGSSGIPNAVLLAHFDVASNSLSDQPVGRLGTGSELPYRMALHPGGDGLICAMPKSCGWFEWDQNWSAKSHELGQKVSDKVLSELEDVGQQLALAFDNDGTMLAVGGEDGNLRVFKWPSMEIILNETKAYSTVKDLHFSSDGKLLVSLGSGGPCRVWDVSSSTVLISISSKKGEIFSSCRFSQINDGTHVLYIAAMTDKGGSILTWDAKTGARIGSKHITRDAISAFNVSTDGKLVACGTPSGDIMIVNSTNTKILSMIKKAHLGIVTALAFSHDSRALASVSFDSSARVTLIEEKQKSGGLSLWIAVLFIILGIIAAYFLKLQDIDKLKLSFLQN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1645 404 MobiDBLite consensus disorder prediction 40 55 - -
Lele50g1645 404 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 59 358 IPR011047 -
Lele50g1645 404 Pfam WD domain, G-beta repeat 161 183 IPR001680 GO:0005515
Lele50g1645 404 MobiDBLite consensus disorder prediction 40 66 - -
Lele50g1645 404 SMART WD40_4 278 317 IPR001680 GO:0005515
Lele50g1645 404 SMART WD40_4 146 184 IPR001680 GO:0005515
Lele50g1645 404 SMART WD40_4 320 360 IPR001680 GO:0005515
Lele50g1645 404 SMART WD40_4 191 226 IPR001680 GO:0005515
Lele50g1645 404 Gene3D - 54 367 IPR015943 GO:0005515
Lele50g1645 404 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 13 388 IPR045260 GO:0005085
Lele50g1645 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 235 IPR001680 GO:0005515
Lele50g1645 404 FunFam SEC12-like protein 2 53 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1645 Lele-ChrLele50 21499094 21503439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1645 160 307 Miscellaneous Gene Families AT5G08390 26.846 4.23e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1645 50 21499094 21503439 Lele50g1645 50 21499094 21503439 ECH
Lele50g1645 50 21499094 21503439 Lele51g1216 51 7994863 8005877 hybridization
Lele50g1645 50 21499094 21503439 Lele52g1600 52 19895072 19899426 hybridization