Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1196 ATGGTGGGAGGTGCTGTAGATCCTCCAAACTTCAAGAAATATGGCGTTCCTTCCTACTCAGCCGCATGGATCCCACCAAATGTCATCAAATCAGTATTGAAACAAAAAAGTGGTGAAGCCTCTGACAACGTCGACAGCTCCACGCCTCAGCCACCCGAGCAGTCCGAAGAGCTCTACCTTGCCATCACTGGTGGTGGTGGTGAAGGCAGTAGCGGTATTCCCAATGCTGTGTTGCTTGCATATTTTGATGTCGCATCTAATTCTCTCTCTGATCAGCCAGTGGGCAAGCTTGGAACTGATTCTGAGTTGCCTTATAGAATGGCACTTCACCCCGGTGGAGATGGCCTTATTTGTGCGATGCCAAAGAGTTGCAGATGGTTTGAATGGAACAAAAACAAGAGTGCAGAAAATCATAAGTTAGGTCTGAAGGTTTCTGATAAAGTACTCAGTGAGTTGGAGGATGTTGGGCAGCAGTTAGCTCTGGCATTTGACAATGATGGCACTATGCTAGCTGTTGGTGGGGAGGATGGCAATCTGAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTCTCAATGAGACTAAAGCTTATTCGACAGTAAAAGATTTACATTTCAGCTCTGATGGTAAAATGCTTGTCTCTTTGGGAAGTGGTGGGCCGTGCAGAGTTTGGGATGTTTCCTCATCAACGGTCTTAACTTCCATCTCAAGTAAAAAGGGTGAGGTTTTTAGCTCTTGCAGATTTTCTCAAATAAATGATGGGACCCATGTCTTGTATATTGCTGCCATGACAGACAAAGGTGGAAGCATTCTAATATGGGATGCAAAAACTGGGGCAAGGATTGGCTCAAAGCATATTACTCGTGATGCAATCTCTGCATTCAATGTCTCAACTGATGGAAAGTTAGTTGCATGTGGAACACCTTCAGGAGACATTGTGATTGTAAATTCAACACATATGAAGATTCTGTCGATGATTAAAAAGGCTCACCTTGGCATAGTAACTGCTTTAGCTTTCTCCCATGATTTAAGGGCTTTGGCTTCTGTATCCTTTGATTCAAGTACAAGGGTCACTGTAATTGAGGAGACGAAGAAAAGTGGAGGATTGAGCTTATGGATTGCTGTACTCTTCATCATACTTGCAATTGTAGCTGCCTATTTCCTGAAACTTCAAGACATTGACAAGTTGAATGTGCAAGAACACACTGCTGCTCCTGACCGGGGAAAATCGCCACTTCCGCTGATCTTTCACGATTTCCTTCACTCTCTCGTTCCGTTTGTGTTTCTTTCGACTGCGAAAATGGATCCATCTTCAGTTCTGTATAACCAGCTGAAGTCAGCAAACCCTTTCTTCCTTCTAGCGGGTCCAAATGTGATTGAATCTGAGGAGCACGTTCTCCGGATGGCTAAGCACATAAAGAGTATCACATCAAAAGTAGGAGTACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCCAATCGAACATCATCAAAATCATTTCGCGGCCCTGGCATGGATGAAGGATTGAAGATACTTGAGAAGGTCAAAATAGCCTATGACATCCCTATTGTGACAGATGTGCATGAGGCTATCCAGTGCGAACCAGTTGGCAGGGTTGCAGATATTATTCAGATTCCAGCATTCTTGTGTCGTCAAACAGATCTTCTAGTGGCAGCAGCCAAAACTGGAAAAATTGTCAACATCAAGAAAGGCCAGTTCTGTGCCCCTTCTGTCATGACAAATTCAGCTGAAAAGATTAGATTGGCTGGAAATCCAAATGCGATGGTTTGTGAGAGAGGAACTATGTTTGGTTACAATGATTTGATTGTTGATCCACGAAACCTGGAGTGGATGAGAGAAGCCAATTGTCCTGTTGTAGCTGATATCACACATTCATTACAACAGCCTGCTGGGAAAAAGTTGGAAGGTGGAGGCGTTGCAAGTGGAGGACTTCGAGAATTGATACCATGCATTGGAAGGACAGCAGTTGCTGTTGGAGTGGACGGGATTTTCATGGAGGTACATGATGATCCCCTCAATGCACCTGTTGATGGTCCAACACAGTGGCCTTTGCGCCATCTGGAGGAACTGCTGGAAGAACTCGTAGCTATCTCTAGGGTAAGCAAAGGGAAACAACAATTCAACATTGATCTCACGCCATACCGTGAATAG 2172 0.4434 MVGGAVDPPNFKKYGVPSYSAAWIPPNVIKSVLKQKSGEASDNVDSSTPQPPEQSEELYLAITGGGGEGSSGIPNAVLLAYFDVASNSLSDQPVGKLGTDSELPYRMALHPGGDGLICAMPKSCRWFEWNKNKSAENHKLGLKVSDKVLSELEDVGQQLALAFDNDGTMLAVGGEDGNLRVFKWPSMEIILNETKAYSTVKDLHFSSDGKMLVSLGSGGPCRVWDVSSSTVLTSISSKKGEVFSSCRFSQINDGTHVLYIAAMTDKGGSILIWDAKTGARIGSKHITRDAISAFNVSTDGKLVACGTPSGDIVIVNSTHMKILSMIKKAHLGIVTALAFSHDLRALASVSFDSSTRVTVIEETKKSGGLSLWIAVLFIILAIVAAYFLKLQDIDKLNVQEHTAAPDRGKSPLPLIFHDFLHSLVPFVFLSTAKMDPSSVLYNQLKSANPFFLLAGPNVIESEEHVLRMAKHIKSITSKVGVPLVFKSSFDKANRTSSKSFRGPGMDEGLKILEKVKIAYDIPIVTDVHEAIQCEPVGRVADIIQIPAFLCRQTDLLVAAAKTGKIVNIKKGQFCAPSVMTNSAEKIRLAGNPNAMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLEGGGVASGGLRELIPCIGRTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELVAISRVSKGKQQFNIDLTPYRE 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1196 723 Hamap 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 444 711 IPR006269 GO:0005737|GO:0008676
Lele49g1196 723 FunFam SEC12-like protein 2 52 364 - -
Lele49g1196 723 Gene3D Aldolase class I 432 717 IPR013785 -
Lele49g1196 723 Pfam WD domain, G-beta repeat 160 182 IPR001680 GO:0005515
Lele49g1196 723 Gene3D - 53 365 IPR015943 GO:0005515
Lele49g1196 723 SMART WD40_4 145 183 IPR001680 GO:0005515
Lele49g1196 723 SMART WD40_4 190 225 IPR001680 GO:0005515
Lele49g1196 723 SMART WD40_4 277 316 IPR001680 GO:0005515
Lele49g1196 723 SMART WD40_4 319 359 IPR001680 GO:0005515
Lele49g1196 723 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 234 IPR001680 GO:0005515
Lele49g1196 723 MobiDBLite consensus disorder prediction 34 53 - -
Lele49g1196 723 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 79 356 IPR011047 -
Lele49g1196 723 SUPERFAMILY Aldolase 445 710 - -
Lele49g1196 723 TIGRFAM KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 449 709 IPR006269 GO:0005737|GO:0008676
Lele49g1196 723 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 434 721 IPR006269 GO:0005737|GO:0008676
Lele49g1196 723 Pfam DAHP synthetase I family 448 699 IPR006218 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1196 Lele-ChrLele49 7937343 7948510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1196 159 306 Miscellaneous Gene Families AT5G08390 26.174 3.05e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1196 49 7937343 7948510 Lele49g1196 49 7937343 7948510 ECH
Lele49g1196 49 7937343 7948510 Lele51g1216 51 7994863 8005877 hybridization
Lele49g1196 49 7937343 7948510 Lele52g1600 52 19895072 19899426 hybridization