Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1591 ATGATTACTTGGAAAGATCTCTACACTGTTCTTTCGGCCATGGTGCCACTGTATGTGGCCATGATTCTAGCCTACGGCTCCGTCCGATGGTGGAAGATATTCTCGCCGGACCAGTGCTCCGGCATTAACCGGTTCGTCGCGATCTTCGCTGTCCCTCTTCTCTCATTCCATTTCATCTCAATCAACAATCCGTACGAAATGAATTTGCGCTTCATCGCCGCCGATACACTTCAGAAGATCATCATGCTCGTCGCGCTCGCCATCTGGACGAACTTCACCAAGACCGGAAGTCTCGATTGGATGATTACTATTTTCTCGCTGTCCACATTGCCGAACACTCTGGTGATGGGGATTCCATTATTGATCGCCATGTACGGAGAGTACTCCGGCAGCCTCATGATTCAGGTGGTGGTGTTACAGTGCATCATCTGGTACACGCTCTTGCTGTTTCTCTTTGAGTATCGCGGCGCCAAGCTGTTGATTATGGAGCAGTTCCCGGAGACTGCGGCGTCCATCGTGTCGTTCAAGGTGGACTCCGATGTGGTCTCGCTCGACGGCCGGGACTTCCTCGAGACTGACGCAGAGGTCGGAGACGACGGGAAGCTTCACGTGACGGTGAGAAAGTCCAACGCGTCGAGGAGGTCGTTCATGATGACTCCCCGACCGTCGAACCTCACCGGTGCTGAGATTTACAGCCTGAGCTCTTCTCGGAATCCGACGCCAAGAGGATCCAATTTCAACCACGCTGATTTCTACTCAATGATGGGGTACCCGTCAGGACCAAGACATTCAAACGTCACCGGCTCGGCGGAGCTACACTCAATTCAACCATCGAGACCATCGAATTTTGAAGAAAACTGCCCAATTCCAATGGCAGCTCCGGCCACGAACTCTCCTCGGATGGGATTTTATCCCGTACAACAACAGCCATCTTCGTACCCAGCGCCAAATCCAGAATTCTCATCATCCAACTTAAGCTCCAGAAGTCTCAAACAACAAAATCAAGCTCCTGCTCTCAACAGTACGAGCAAAGCAAGTCATGACGCTAAAGAGCTTCACATGTTTGTGTGGAGCTCAAGCGCTTCGCCCGTCTCAGAACGCGGCGGCAGCGGTGCCGGACTGCATGTATTTGGCGGTGGCTCCGAGGATCAATCCGGACGCTCCGATCAGGGTGCCAAAGAAATTCGGATGCTGGTGGCTGATGACCATCACCCTCATCAAAATGGGGAATTAAACAAAGATATTCCAGATGCAGAGTTTGGAGAGGAAGAGTTGAAGCTAGTAGGGAAGGGAGTAGAAGAAGCAGAAGCAGTAGCAGTAGCATTGGAAGAAGAGAAAGAGAAAGAGAGAGAGGGATCCACTGGACTGAACAAGCTGGGATCGAGTTCAACAGCGGAGCTACAACCGAAGGGCAACGGATTGATGGAGTCCGGCATCGGAAAACAAATGCCGCCGGCGAGTGTGATCACGCGTCTCATACTGATCATGGTGTGGCGGAAGCTTATCCGCAACCCCAATACTTACTCCAGCCTGATTGGCGTGATTTGGTCCCTCATTGCCTTCAGGTGGCATGTGGAGATGCCGAAAATAATAGAGAAGTCAATCTCAATCCTGTCGGATGCAGGTCTTGGAATGGCTATGTTCAGTTTGGGTCTGTTCATGGCTCTTCAACCAAAAATCATTGCATGTGGAAACTCCGTTGCCGCCTTTGCCATGGCTATTAGGTTCCTCACCGGCCCAGCAGTGATGGCAGCAGCCTCCATCGCCATCGGCCTCCGTGGCGATCTTCTCCGTGTAGCCATTGTTCAGGCTGCACTTCCACAAGGTATTGTTCCCTTCGTGTTTGCCAAAGAGTACAACGTCCATCCAGCCATTCTCAGCACAGCGGTTATATTTGGAATGCTAATAGCACTACCAATTACTCTAGTCTATTACATTCTTCTCGGCTTGTAG 1953 0.5136 MITWKDLYTVLSAMVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISINNPYEMNLRFIAADTLQKIIMLVALAIWTNFTKTGSLDWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMIQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEVGDDGKLHVTVRKSNASRRSFMMTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHADFYSMMGYPSGPRHSNVTGSAELHSIQPSRPSNFEENCPIPMAAPATNSPRMGFYPVQQQPSSYPAPNPEFSSSNLSSRSLKQQNQAPALNSTSKASHDAKELHMFVWSSSASPVSERGGSGAGLHVFGGGSEDQSGRSDQGAKEIRMLVADDHHPHQNGELNKDIPDAEFGEEELKLVGKGVEEAEAVAVALEEEKEKEREGSTGLNKLGSSSTAELQPKGNGLMESGIGKQMPPASVITRLILIMVWRKLIRNPNTYSSLIGVIWSLIAFRWHVEMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVAAFAMAIRFLTGPAVMAAASIAIGLRGDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYILLGL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1591 650 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 650 - -
Lele52g1591 650 MobiDBLite consensus disorder prediction 361 390 - -
Lele52g1591 650 Coils Coil 432 452 - -
Lele52g1591 650 MobiDBLite consensus disorder prediction 301 345 - -
Lele52g1591 650 MobiDBLite consensus disorder prediction 442 477 - -
Lele52g1591 650 MobiDBLite consensus disorder prediction 262 283 - -
Lele52g1591 650 Pfam Membrane transport protein 9 645 IPR004776 GO:0016020|GO:0055085
Lele52g1591 650 MobiDBLite consensus disorder prediction 455 470 - -
Lele52g1591 650 TIGRFAM 2a69: auxin efflux carrier 1 650 IPR014024 -
Lele52g1591 650 MobiDBLite consensus disorder prediction 262 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1591 Lele-ChrLele52 19820857 19824221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1591 1 650 Organic Solute Cotransporters AT1G70940 73.094 0.0 924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1591 52 19820857 19824221 Lele52g1591 52 19820857 19824221 ECH
Lele49g1204 49 8007610 8010858 Lele52g1591 52 19820857 19824221 hybridization
Lele50g1637 50 21433624 21436804 Lele52g1591 52 19820857 19824221 hybridization