Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1541 ATGAGCAGCCCAGCTGAGGAACACTCGCTAGCGAAGGCTGCGAAATTAGTTGAAGATCTTTACCACTTCCGAGACACCTATTTCCCGGAAAATCAAGATGACAAGATCTCCAAACTGCGAGAGCAATCCGATCTTGCTCTGATTTTCCTCGATTCTATTCCTCCAGAAGAAAGGAAGTTGCTCTTGCAACGTGCAACGTTTGAGTATTTGAGAGGGAAGATATTGGATGTCTGTCCTGACTATAACAAAGAAGCAGAGGATCATCTATCAAAAGCTGTAAGCACAATCAAGTTGTTAGTTAAGCTAGACCCATCTCTTGCAGATGCTTGGCTATGTTTAGGCAACTGCATTTGGAAGAAGGGAGATCTATCTGCCGCTAAAAACTGCCTTAGTCTTGCATTAAGCAAGGGTCCTAACAAGAATATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCACAAGGTGCTGAGAATCAGGCAGAACTTGTTGAGGAAAGCATTCAACACGCCAAGGAAGCTATCACTTTGGATGTCAAGGATGGTTATTCTTGGTATAATCTTGGAAATGCGTGCCTTACTAGTTTTTTTGTCTCTGGATCTTGGGATCATAGCAAACTTCAACATTCTGTAAAAGCATATCAAAATGCTGAGAAAGATGAAAGAATGAAGTCGAATCCAGATCTATATTTTAATAGCTCTATTGTTAATAGATATCTAGAGAATTATGAGAGGGCCCTCAGTGGGTTCGAGGCTGCTGCTTTAAAGGATCCAAGTCTGAATGCTGCAGCAGAGGTTCAGAAAATAGTCAGCCTACTTGACAAGTTGGACAATCTTATGAGGGGGGGACATTTAAAAGCTAAGCGTATGGCAAGTTTGGCCTCATCTTTAGCTGTTGTAAATTTGAGTCCATCATACAATAGAGCTACTATAGACCGTATGTTGGAGGGTCTGAACAGAGCAGTAGCAATAGATGGGAAGGTATTATTCTTTGTTACGAATGACACTGTTGCTCCCCTATACTATTTGCTTTATGATTCAAACCAAAATTGCTTTGTCCTTACAGTTTATGGCTTACGTATAGACGTGATCAAGGAAAGAGATCAGCTAACGCTGCTTGATCCATATTTCCGTCTAGTTGATTTTTCATGGAAGGAGAAGCATTACCAGTTCAAGTCCATACGCGTGGATTTCCCAGAACAAATACTTGTGAATGGAAAAGCTGTGACCACTCAACAAGCTGTTCTGTCATCAATACATGCACAACACAAACCTTGA 1278 0.4069 MSSPAEEHSLAKAAKLVEDLYHFRDTYFPENQDDKISKLREQSDLALIFLDSIPPEERKLLLQRATFEYLRGKILDVCPDYNKEAEDHLSKAVSTIKLLVKLDPSLADAWLCLGNCIWKKGDLSAAKNCLSLALSKGPNKNILCQLSMLKRKMSQGAENQAELVEESIQHAKEAITLDVKDGYSWYNLGNACLTSFFVSGSWDHSKLQHSVKAYQNAEKDERMKSNPDLYFNSSIVNRYLENYERALSGFEAAALKDPSLNAAAEVQKIVSLLDKLDNLMRGGHLKAKRMASLASSLAVVNLSPSYNRATIDRMLEGLNRAVAIDGKVLFFVTNDTVAPLYYLLYDSNQNCFVLTVYGLRIDVIKERDQLTLLDPYFRLVDFSWKEKHYQFKSIRVDFPEQILVNGKAVTTQQAVLSSIHAQHKP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1541 425 SMART tpr_5 227 260 IPR019734 GO:0005515
Lele52g1541 425 SMART tpr_5 107 140 IPR019734 GO:0005515
Lele52g1541 425 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 48 388 - -
Lele52g1541 425 SUPERFAMILY TPR-like 87 251 IPR011990 GO:0005515
Lele52g1541 425 Pfam Tetratricopeptide repeat protein 5 OB fold domain 306 415 IPR032076 -
Lele52g1541 425 Gene3D - 284 425 IPR038645 -
Lele52g1541 425 Coils Coil 154 174 - -
Lele52g1541 425 Gene3D Tetratricopeptide repeat domain 3 282 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1541 Lele-ChrLele52 19384039 19390703 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1541 52 19384039 19390703 Lele52g1541 52 19384039 19390703 ECH
Lele49g1240 49 8307973 8317571 Lele52g1541 52 19384039 19390703 hybridization
Lele50g1589 50 21018456 21022333 Lele52g1541 52 19384039 19390703 hybridization