Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1589 ATGCCTTGCAAATGCTTCTTCTTCTATCATCCAATTGTCCATTTTCTTCTGTGGGCAAGGATACTACAGCTTTGTTTCATAAGTAACTGCATTTGGAAGAAGGGAGATCTATCTGCTGCTAAAAACTGCCTTAGTCTTGCATTAAGCAAGGGTCCTAACAAGAATATTCTCTGTCAATTATCAATGCTTAAAAGAAAGATGTCACAAGGTGCTGAGAATCAGGCAGAACTTGTTGAGGAAAGCATTCAACACGCCAAGGAAGCTATCGCTTTGGATGTCAAGGATGGTTATTCTTGCAAACTTCAACATTCTGTAAAAGCATATCAAAATGCTGTTAATAGATATCTAGAAAATTATGAGAGGGCCCTCAGTGGGTTCGAGGCTGCTGCTTTAAAGGATCCAAGTCTGAATGCTGCTGCAGAGGTTCAGAAAATAGTCAGCCTACTTGACAAGTTGGACAATCTTAGGAGGGTAACAGAATTTTTCCTTGGATGTAGCTATGAAATACTGTAG 513 0.3977 MPCKCFFFYHPIVHFLLWARILQLCFISNCIWKKGDLSAAKNCLSLALSKGPNKNILCQLSMLKRKMSQGAENQAELVEESIQHAKEAIALDVKDGYSCKLQHSVKAYQNAVNRYLENYERALSGFEAAALKDPSLNAAAEVQKIVSLLDKLDNLRRVTEFFLGCSYEIL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1589 170 Gene3D Tetratricopeptide repeat domain 23 158 IPR011990 GO:0005515
Lele50g1589 170 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 28 163 - -
Lele50g1589 170 Coils Coil 68 88 - -
Lele50g1589 170 SUPERFAMILY TPR-like 29 136 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1589 Lele-ChrLele50 21018456 21022333 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1589 50 21018456 21022333 Lele50g1589 50 21018456 21022333 ECH
Lele50g1589 50 21018456 21022333 Lele51g1258 51 8332851 8341825 hybridization
Lele50g1589 50 21018456 21022333 Lele52g1541 52 19384039 19390703 hybridization