Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1240 ATGTCAAGGGTTTCAGGGTCCTTCGCCATAGTAACTGATATGAGCAGCCCAGTTGAGGAACACTCGCTAGCGAAAGCTGCGAAATTAGTTGAAGATCTTTATCGCTTCCGAGACACCTATTTCCCGGAAAATCCAGATGACAAGATCTCGAAACTGCAAGAACAATCCGATCTTGTGCTGAAATTCCTTGATTCTATTCCTCCAGAAGAAAGGAAGCCGCCCTTGCAACGTGCAACATTTGAGTATTTGAGAGGGAAGATATTGGATGTCTGTCGTGACTATAACAAAGAAGCAGAGGATCATCTATCAAAAGCTGTAAGCACAATCAAGTTGTTAGTTAAGCTAAACCCATCTCTTGCAGATGCTTGGCTATGTTTAGGCAATTGCATTTGGAAGAAAGGAGATCTATCTGCTGCTAAAAACTGCCTTAATCTCGCATTAAGCAAGGGTCCTAACAAAAATATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCACAAGGTGCTGAGAATCAGGCAGAACTTGTTGAGGAAAGCATTCAACACGCCAAGGAAGCTATCACTTTGGATGTCAAGGATGGTTATTCTTGGTATAATCTTGGAAATGCATGCCTTACTAGTTTTTTTGTCTCTGGATCTTGGGATCATAGTAAACTTCAACATTCTGTAAAAGCATATCAAAATTCTGAGAAAGATGAAAGAATGAAGTCCAATCCAGATCTATATTTTAATAGTGCCATTGTTAATAGATATCTAGAGAATTATGAGAGGGCCCTCAGTGGGTTCGAGGCTGCTGCTTTAAAGGATCCAAGTCTGAATGCTGCTGCAGAGGTTCAGAAGATAGTCAGCCTACTTGACAAGTTGGACAATCTTATGAGGGGGGGACATTTAAAAGCTAAGCGAATGGCAAGTTTGGCCTCATCTTTAGCTGCTGTAAATTTGAATCCATCATACAATAGAGCTACTATAGACCGTCTGTTGGAGGGTCTGAACAGAGCAGTAGCAATAGATGGGAAGGTATTATTCTTTGTTACGAATGACACTGTTGCTCCACTATACTATGTGCTTTGTGATTCAAACCAAAATTGCTTTATTCTTACAGTTTATGGCCTACGTATAGATGTGATCAAGGAAAGAGATCAGCTAACGCTGCTTGATCCATATTTCCGTCAAGTTGATTTTTCCTGGAAGGAGAAGCATTACCAGTTCAAGTCTATACGCGTGGACTTCCCAGAACAAATACTTGTGAATGGAAAAGCTGTGACCCCTCAACAAGCTGCTCTGTCGTCGATACATGCACAACACAAACCTTGA 1317 0.4062 MSRVSGSFAIVTDMSSPVEEHSLAKAAKLVEDLYRFRDTYFPENPDDKISKLQEQSDLVLKFLDSIPPEERKPPLQRATFEYLRGKILDVCRDYNKEAEDHLSKAVSTIKLLVKLNPSLADAWLCLGNCIWKKGDLSAAKNCLNLALSKGPNKNILCQLSMLKRKMSQGAENQAELVEESIQHAKEAITLDVKDGYSWYNLGNACLTSFFVSGSWDHSKLQHSVKAYQNSEKDERMKSNPDLYFNSAIVNRYLENYERALSGFEAAALKDPSLNAAAEVQKIVSLLDKLDNLMRGGHLKAKRMASLASSLAAVNLNPSYNRATIDRLLEGLNRAVAIDGKVLFFVTNDTVAPLYYVLCDSNQNCFILTVYGLRIDVIKERDQLTLLDPYFRQVDFSWKEKHYQFKSIRVDFPEQILVNGKAVTPQQAALSSIHAQHKP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1240 438 Coils Coil 167 187 - -
Lele49g1240 438 SMART tpr_5 120 153 IPR019734 GO:0005515
Lele49g1240 438 SMART tpr_5 240 273 IPR019734 GO:0005515
Lele49g1240 438 Gene3D Tetratricopeptide repeat domain 17 295 IPR011990 GO:0005515
Lele49g1240 438 SUPERFAMILY TPR-like 25 170 IPR011990 GO:0005515
Lele49g1240 438 Gene3D - 297 438 IPR038645 -
Lele49g1240 438 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 53 401 - -
Lele49g1240 438 Pfam Tetratricopeptide repeat protein 5 OB fold domain 319 428 IPR032076 -
Lele49g1240 438 SUPERFAMILY TPR-like 100 264 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1240 Lele-ChrLele49 8307973 8317571 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1240 49 8307973 8317571 Lele49g1240 49 8307973 8317571 ECH
Lele49g1240 49 8307973 8317571 Lele51g1258 51 8332851 8341825 hybridization
Lele49g1240 49 8307973 8317571 Lele52g1541 52 19384039 19390703 hybridization