Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1537 ATGGCTGCATCATCTTCTACTTTGGCCGCCACCAACATCATGCTTGCCATCTTCGAGAAGAAGACAAACTCAATCGATCTCTACCGTCCTCTTCGCAACTACATCGCTTTCCACTACTCCGAACGCGAGGCCCAGAACATCGAAGATGACCTCCAAACCCTTAAGCAACTCCGTTCCGACCTCGAGCGCCACTCTGACCCTTCCCTTACCGCTCGCCGCGATCTTCTTCTATCCTACTTCAAAGCTCTCTGCCTTGTGGAAACCCGTTTCCCCATATCTTCTGACCCAGATCACGTCAATAGTCTTAGCTTTGTGTGGTTCGATGCGTTTAAGCCCAAATTGAAGGCCACCCAGCAGAATATTCACCTTGAGAAAGCCGCGGTGTTGTTCAATTTGGGTGCAGTTTATAGTCAAATTGGCCTATCCTATGATCGGAATACTGTTGACGGCCGGAGGCAGGCTTCGCATGCGTTTATTGCAGCTGCTGGGTCGTTTGCTTACTTGAGGGATAATGCGGCCATGAAGGCGTCAATTGGGAGTTCCACAACAGTGGATTTGTCTGTTGAGTGCTCAGGAATGTTGGAGAGGCTGATGCTGGCTCAAGCACAAGAGTGCGTGTTTGAGAATACCATCGCAAAAGGAAGCACCCCTGGTGTTTGTGCGAAGATCTCTAGGCAGGTCGGGCTATACTATGAGGAAGCTTTAGCTGCATTGAATGTTGCAACTCTAAATCAGCATTTTGACAAGTCTTGGTTAGCTCATGTGCAGCTAAAGGCAGCTCTATTCTTTGGTGAAGCTTGCTATAGATATGGATTAGAGCTACATGAGAAAGAAGAGATAGCCGAGGAGATTGCAAGACTGAGGAGTGGGGTTAATGCACTAACTGAAGCAAGGAAAAGCTCAAAGGGTGCCCCAGCACAAATCCTAGACGCAATTAGTAAGTTAGAGGCCAATCTTAACCGAAACCTTGAAAGGGCTGTTAAAGAGAATGATAGAGTTTACCTCATGAGGGTTCCTTCTCCTAGTTCCTTAGCGCCTCTTCTTGCTTTTTCCATGGTGAAACCAATGTCAATGAATGAAGTGCTGGATGCAAGTAAAGAGAAAATGTTTGCAAGCCTTGTTCCTGACAGCAGCGCTAAATCACTCTCCAGGTACACTGAGATGGTAGATGAAATTATAAGAACCCAGGCTGAAAAATTGCAACAAGCCAGCGAGTTAACCCGAATAAGGTTAAAGGAAATGGAGCTTCCTGATTCTATTATTGCTTTGGAAGGAAATTTAACTCTACCAACACATCTGAAAGAAGATGTGGAGGCCGTGCAGATCAGTGGGGGTCCTGCTGGTTTGGAAGCAGAGTTGGAGCAACTTAAGGATCTAAGGAGGGTGAATCAAGAAATGTTGGTCCAGACGGAGGAGCTGTTGCAGAAGGAGGCAAGAGAAGATGCCCAATTTAGAAGCCAATTTGGGACAAAGTGGACTAGGCCTCAATCAAGCACTTTAACAAAGAACTTGCAGGACAGATTAAATAGATTTGCAGGTAACTTGAAGCAAGCTGCAGAAAGTGATGGTCGGATTGAGCGTTCAGTTAGAGAACACGCTGCACTTATGTACATCCTTGACAGCCGTCCGATTGAATCTGCACTCCCTTCCTTGGCGAGGCCAATAATGTCTCTAGATGCCAATGAAGATGCTATTGTGGGGTCCCTCAAGCAGAGCTTGAGGCAACTCGAAACTCTGGGAACTCAAAGGGCTGGCCTTGAAGACATGCTTAAAGAGATGAGAAGAAAGGATGATATACTACCCAAGTTGATGACGTCAACTGGTTCTCATGAGGATCTTTTTAAGAAAGAGATAACAAAATATGACCATATATGTGAAGAAATAGCTCAAAACATTGATGCACAAGAGCAGCTGTTGCTGCAGATTCAGGATCAAAATGACGAGTTCTCTGCTATCTTTAATCTTGAAGATTACAAAGCTTCGCGTGAAAAATGCTACAAGCAGATTGAAGCTGCCATAGCAAAGTATCGAGAAATAAAAGACAACATCAATGAAGGGTTGAAATTTTATGTTACGCTGCAGGATGCAATCACAAATGTAAAGCAGCAGTGCAGTGACTTTATAATGACCAGAAACATCCAGTGCAGGGAAATGATTGAAGATGTCCAGAGACAAGTGGCTGGTCTCAGTTTCCAGGATAACAAAACCACTGGCCCCTCTAACAGTAGCTACCTTTCGACGGGACACCAGCCTCAAAGATCCTATCCTCCAGATTCTCGTACCCAAACTGGATATTATCAGCCGCTGCCTCCCGAACAGCCATCAGCAGCTGGGTATGCTCAACCCCCTGCATATGGTTCTGCACATCAGCCGCCTTCTCCATACCACATACCACACCAATCAGCCATTCCATATCCTCCTCAGGTGCCCCCGCAGCAACCAGCAGGTCATGACTATGGCCAACCTGCATATCCTGGATGGCGGGGCCCATACTATAATGCGCATTCTCAACAACCTTCCTCGGTTCCTCGGCCTCCTTACACCATTCCTGGTCCATACCCTCCTCATCAAAGTGGCTACTATAAGCAACAATAG 2595 0.4636 MAASSSTLAATNIMLAIFEKKTNSIDLYRPLRNYIAFHYSEREAQNIEDDLQTLKQLRSDLERHSDPSLTARRDLLLSYFKALCLVETRFPISSDPDHVNSLSFVWFDAFKPKLKATQQNIHLEKAAVLFNLGAVYSQIGLSYDRNTVDGRRQASHAFIAAAGSFAYLRDNAAMKASIGSSTTVDLSVECSGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVATLNQHFDKSWLAHVQLKAALFFGEACYRYGLELHEKEEIAEEIARLRSGVNALTEARKSSKGAPAQILDAISKLEANLNRNLERAVKENDRVYLMRVPSPSSLAPLLAFSMVKPMSMNEVLDASKEKMFASLVPDSSAKSLSRYTEMVDEIIRTQAEKLQQASELTRIRLKEMELPDSIIALEGNLTLPTHLKEDVEAVQISGGPAGLEAELEQLKDLRRVNQEMLVQTEELLQKEAREDAQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREHAALMYILDSRPIESALPSLARPIMSLDANEDAIVGSLKQSLRQLETLGTQRAGLEDMLKEMRRKDDILPKLMTSTGSHEDLFKKEITKYDHICEEIAQNIDAQEQLLLQIQDQNDEFSAIFNLEDYKASREKCYKQIEAAIAKYREIKDNINEGLKFYVTLQDAITNVKQQCSDFIMTRNIQCREMIEDVQRQVAGLSFQDNKTTGPSNSSYLSTGHQPQRSYPPDSRTQTGYYQPLPPEQPSAAGYAQPPAYGSAHQPPSPYHIPHQSAIPYPPQVPPQQPAGHDYGQPAYPGWRGPYYNAHSQQPSSVPRPPYTIPGPYPPHQSGYYKQQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1537 864 Pfam ALIX V-shaped domain binding to HIV 429 713 IPR025304 GO:0005515
Lele52g1537 864 Coils Coil 309 332 - -
Lele52g1537 864 Coils Coil 625 645 - -
Lele52g1537 864 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
Lele52g1537 864 MobiDBLite consensus disorder prediction 730 769 - -
Lele52g1537 864 Coils Coil 576 596 - -
Lele52g1537 864 SMART BRO1_2 13 397 IPR004328 -
Lele52g1537 864 CDD BRO1_Alix_like_1 14 369 - -
Lele52g1537 864 CDD V_Alix_like_1 375 711 - -
Lele52g1537 864 Coils Coil 277 297 - -
Lele52g1537 864 Pfam BRO1-like domain 14 393 IPR004328 -
Lele52g1537 864 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Lele52g1537 864 Coils Coil 449 476 - -
Lele52g1537 864 Coils Coil 44 64 - -
Lele52g1537 864 MobiDBLite consensus disorder prediction 797 813 - -
Lele52g1537 864 PANTHER PCD6 INTERACTING PROTEIN-RELATED 12 855 IPR045251 -
Lele52g1537 864 Gene3D alix/aip1 like domains 421 702 - -
Lele52g1537 864 Gene3D alix/aip1 like domains 9 374 IPR038499 -
Lele52g1537 864 MobiDBLite consensus disorder prediction 730 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1537 Lele-ChrLele52 19363763 19370516 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1537 52 19363763 19370516 Lele52g1537 52 19363763 19370516 ECH
Lele49g1242 49 8329751 8335291 Lele52g1537 52 19363763 19370516 hybridization
Lele50g1584 50 20985938 20992617 Lele52g1537 52 19363763 19370516 hybridization