Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1242 ATGGCTGCATCGTCGTCTACTGCGGCCACCACCAACATCATGCTGGCCATCTTCGAGAAGAAGACAAACTCAATTGATCTCTATCGGGCTCTTCGCAACTACGTCGCTTTCCACTATTCCGAACGCGAGGCCCAGAACATTGAAGACGACCTCCAAACCCTTAAGCAACTCCGTTCCGACCTCGAGCGCCACTCTGACCCTTCCCTTACGGCTCGCCGCGATCTTCTTCAATCCTACTACAGAGCTCTCTGCCTTGTGGAGACCCGTTTCCCCATATCTTCTGACCCAGATCACGTCAATACTCTTAGCTTTGTGTGGTTCGATGCGTTTAAGCCCAAATTGAAGGCTAGCCAGCACAATATTCACCTTGAGAAAGCCGCGGTGTTGTTCAATTTGGGTGCAGTTTATAGTCAAATTGGGCTATCCTATGATCGGAATACTGTTGACGGCCGGAAGCAGGCCTCGCATGCGTTTATTGCAGCTGCTGGGTCGTTTGCTTACTTGAGGGATAATGCGGCCATGAAGGCGTCAATTGGGAGTTCCACAACAGTGGATTTGTCTGTTGAGTGCTCAGGAATGTTGGAGAGGTTGATGCTGGCTCAAGCTCAAGAGTGCGTGTTTGAGAATACCATTGCAAAAGGAAGCACCCCGGGGGTTTGTGCGAAGATCTCTAGGCAGGTTGGGCTATACTATGAGGAAGCTTTAGCTGCATTGAACGTTGCACCTCTAAATCAGCATTTTGACAAGTCTTGGTTAGCTCATTTGCGGCTAAAGGCAGCTCTATTCTTTGGTGAAACTTGCTATAGATATGGATTAGAGCTACATGAGAAAGAAGAGATAGCTGAGGAGATTGCAAGACTGAGGAGTGGGGTTAATGCGCTAACTGAAGCAAAGAAAAGCTCAAAGAGTGCCCCAGAACAAATCTTAGATGCAATTAGTAAGTTAGAGGCCAATCTTAACCGAAACCTTGAAAGGGCTGTTAAAGAGAATGATAGAGTTTACCTCATGAGGGTTCCTTCTCCTAGTTCCTTAGCACCTCTTCCTGCTTTTTCCATGGTAAAACCAATGTTAATGAACGAAGTGCTGGATGCAAGTAAAGAGAAAATGTTTGTAAGTCTTGTTCCTGACAGCAGCGCAAAATCACTCTCTAGGTACACTGAGATGGTAGATGAAATTATAAGAACCCAGGCTGAAAAATTGCAACAAGCCAGTGAGTTAACCCGAATAAGGCTAAAGGAAATGGAGCTTCCTGATTCTATTCTTGCTTTGGAAGGAAATTTAACTCTACCAACACATCTCAAAGAAGATGTGGAGGCCGTGCAGATCAGTGGGGGTCCTGTTGGCTTGGAAGCAGAGTTACAGCAACTAAAGGATCTAAGGAGGGTGAATCAAGAAATGTTAGTCCAGACAGAGGAGCTGTTGCAGAAGGAGGCAAGAGAAGATGCCCAATTTAGAAGCCAATTTGGGACAAAGTGGACTAGGCCTCAATCAAGCACTTTAACAAAGAACTTGCAGGATAGATTAAATAGATTTGCAGGTAACTTGAAGCAAGCTACAGAAAGTGATGGTCGGATTGAGCGTTCAGTTAGAGAACACGCTGCACTTATGTCTATCCTTGACAGCCGTCCGATTGAATCGGCACTTCCTTCCTTGGCGAGGCCGATAATGTCTCTAGATGCCAATGAAGATGCTATTGTGGGGTCCCTCAAGCAGAGCTTGAGGCAACTCGAAACTCTGGGAGCTCAAAGGGCTGGCCTTGAAGACATGCTCAAAGAGATGAGAAGAAAGGATGATATACTACCCAAGTTGATGACGTCAACTGGTTCTCATGAGGATCTTTTTAAGAAAGAGATAACAAAATATGACCATATATGTGAAGAAATAGCTCAAAACATTGATGCACAAGAACAGTTGTTGCTGCAGATTCAGGATCAAAATGATGAGTTCTCTGCTATCTTTAATCTTGAAGATTACAAAGCTTCGCGTGAAAAATGCTACAAGCAGATTGAAGCTGCCATAGCAAAGTATCGAGAAATAAAAGACAACATCAATGAAGGGTTGAAATTTTATGTTACGCTGCAGGATGCAATCACAAATGTAAAGCAGCAGTGCAGTGACTTTATAATGACCAGAAACATCCAGTGCAGGGAAATGATTGAAGATGTCCAGAGACAAGTGGCTGGTCTCAGTTTCCAGGACAAAACCACTGGCCCCTCTAACAGTAGCTACCCTTCTATGGGACACCAGCCTCAAAGATCCTATCCACCAGATTCTCGCCCCCAAACTGGATATTATCAGCCGCCACCTGAACAGCCATCAGCAGCTGGGTATGCTCAACCTCCTCCATATGGTTCTGCACATCAGCCGCCTTCTCCTTACCACATGCCACACCCATCTGGCACTCCATATCCTCCTCAGGTACCCCCGCAGCAGCCAGCAGGCCATGACTATGGCCAACCTGCGTATCCTGGATGGGGTGGCCCATACTATAATGCTCATTCTCAACAACCTTCCTCAGTTCCTCGGCCTCCTTACACCATTCCTGGTCCATATCCTCCTCATCAAAGTGGCTACTATAAGCAACAATAG 2589 0.4604 MAASSSTAATTNIMLAIFEKKTNSIDLYRALRNYVAFHYSEREAQNIEDDLQTLKQLRSDLERHSDPSLTARRDLLQSYYRALCLVETRFPISSDPDHVNTLSFVWFDAFKPKLKASQHNIHLEKAAVLFNLGAVYSQIGLSYDRNTVDGRKQASHAFIAAAGSFAYLRDNAAMKASIGSSTTVDLSVECSGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLNQHFDKSWLAHLRLKAALFFGETCYRYGLELHEKEEIAEEIARLRSGVNALTEAKKSSKSAPEQILDAISKLEANLNRNLERAVKENDRVYLMRVPSPSSLAPLPAFSMVKPMLMNEVLDASKEKMFVSLVPDSSAKSLSRYTEMVDEIIRTQAEKLQQASELTRIRLKEMELPDSILALEGNLTLPTHLKEDVEAVQISGGPVGLEAELQQLKDLRRVNQEMLVQTEELLQKEAREDAQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQATESDGRIERSVREHAALMSILDSRPIESALPSLARPIMSLDANEDAIVGSLKQSLRQLETLGAQRAGLEDMLKEMRRKDDILPKLMTSTGSHEDLFKKEITKYDHICEEIAQNIDAQEQLLLQIQDQNDEFSAIFNLEDYKASREKCYKQIEAAIAKYREIKDNINEGLKFYVTLQDAITNVKQQCSDFIMTRNIQCREMIEDVQRQVAGLSFQDKTTGPSNSSYPSMGHQPQRSYPPDSRPQTGYYQPPPEQPSAAGYAQPPPYGSAHQPPSPYHMPHPSGTPYPPQVPPQQPAGHDYGQPAYPGWGGPYYNAHSQQPSSVPRPPYTIPGPYPPHQSGYYKQQ 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1242 862 MobiDBLite consensus disorder prediction 783 811 - -
Lele49g1242 862 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Lele49g1242 862 PANTHER PCD6 INTERACTING PROTEIN-RELATED 12 852 IPR045251 -
Lele49g1242 862 Coils Coil 309 332 - -
Lele49g1242 862 Coils Coil 625 645 - -
Lele49g1242 862 MobiDBLite consensus disorder prediction 731 862 - -
Lele49g1242 862 Coils Coil 576 596 - -
Lele49g1242 862 Pfam ALIX V-shaped domain binding to HIV 429 713 IPR025304 GO:0005515
Lele49g1242 862 Pfam BRO1-like domain 14 393 IPR004328 -
Lele49g1242 862 CDD BRO1_Alix_like_1 14 369 - -
Lele49g1242 862 SMART BRO1_2 13 397 IPR004328 -
Lele49g1242 862 Gene3D alix/aip1 like domains 8 374 IPR038499 -
Lele49g1242 862 MobiDBLite consensus disorder prediction 731 760 - -
Lele49g1242 862 CDD V_Alix_like_1 375 711 - -
Lele49g1242 862 Coils Coil 277 297 - -
Lele49g1242 862 Gene3D alix/aip1 like domains 421 702 - -
Lele49g1242 862 Coils Coil 449 476 - -
Lele49g1242 862 Coils Coil 44 64 - -
Lele49g1242 862 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1242 Lele-ChrLele49 8329751 8335291 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1242 49 8329751 8335291 Lele49g1242 49 8329751 8335291 ECH
Lele49g1242 49 8329751 8335291 Lele51g1260 51 8351237 8356857 hybridization
Lele49g1242 49 8329751 8335291 Lele52g1537 52 19363763 19370516 hybridization