Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1584 ATGGCTGCATCGTCTTCTACTGCGGCCGCAACCAACATCATGCTTGCCATCTTCGAGAAGAAGACAAACTCAATCGATCTCTATCGTCCTCTTCGCAACTACATCGCTTTCCACTACTCCGAACGCGAGGCCCAGAACATCGAAGATGACCTCCAAACCCTTAAGCAACTCCGTTCCGACCTCGAGCGCCACTCTGACCCTTCCCTTACCGCTCGCCGCGATCTTCTTCTATCCTACTTCAAAGCTCTCTGCCTTGTGGAAACCCGTTTCCCCATATCTTCTGACCCAGATCACGTCAATACTCTTAGCTTTGTGTGGTTCGATGCGTTTAAGCCAAAATTGAAGGCCACCCAGCAGAATATTCACCTTGAGAAAGCCGCAGTGTTGTTCAATTTGGGTGCAGTTTATAGTCAAATTGGGCTGTCCTATGATCGGAATACCGTTGACGGTCGGAGGCAGGCCTCGCATGCGTTTATTGCAGCTGCTGGGTCGTTTGCTTACTTGAGGGATAATGCGGCCATGAAGGCGTCAATTGGGAGTTCCACAACAGTGGATTTGTCTGTTGAGTGCTCAGGAATGTTGGAGAGGTTGATGTTGGCTCAAGCACAAGAGTGTGTGTTTGAGAATACCATCGCAAAAGGAAGCACCCCTGGTGTTTGTGCGAAGATCTCTAGGCAGGTTGGGCTATACTATGAGGAAGCTTTAGCTGCATTGAACGTTGCAACTCTAAATCAGCATTTTGACAAGTCTTGGTTAGCTCATGTGCAGCTAAAGGCAGCTCTATTCTTTGGTGAAGCTTGCTATAGATATGGATTAGAGCTACATGAGAAAGAAGAGATAGCTGAGGAGATTGCAAGACTGAGGAGTGGTGTTGATGCACTAACTGAAGCAAGGAAAAGCTCAAAGGGTGCCCCAGCACAAATCCTAGACGCAATTAGTAAGTTAGAGGCCAATCTTAACCGAAACCTTGAAAGGGCTGTTAAAGAGAATGATAGAGTTTACCTCATGAGGGTTCCTTCTCCTAGTTCCTTAGCGCCTCTTCCTGCTTTTTCCATGGTGAAACCAATGTCAATGAATGAAGTGTTGGATGCAAGTAAAGAGAAAATGTTTGCAAGCCTTGTTCCCGACAGCAGCGCTAAATCACTCTCCAGGTACACCGAGATGGTAGATGAAATTATAAGAAACCAGGCTGAAAAATTGCAACAAGCCAGCGAGTTAACCCGAATAAGGCTAAAGGAAATGGAGCTTCCTGATTCTATTATTGCTTTGGAAGGAAATTTAACTCTACCAACACATCTCAAAGAAGATGTGGAGGCCGTGCAGATCAGTGGGGGTCCTGCTGGTTTGGAAGCAGAGTTACAGCAACTTAAGGATCTAAGAAGGGTGAATCAAGAAATGTTGGTCCAGACGGAGGAGATGTTGCAGAAGGAGGCAAGAGAAGATGCCCAATTTAGAAGCCAATTTGGGACAAAGTGGACTAGGCCTCAGTCAAGCACTTTAACAAAGAACTTGCAGGATAGATTAAATAGATTTGCAGGTAACTTGAAGCAAGCTGCAGAAAGTGATGGTCGGATTGAGCGTTCAGTTAGAGAATACGCTGCACTTATGTCTATCCTTGACAGCCGTCCGATTGAATCTGCACTTCCTTCCTTGGCGAGGCCAATAATGTCTCTAGATGCCAATGAAGATGCTATTGTGGGGTCCCTCAAGCAGAGCTTGAGGCAACTCGAAACTCTGGGAACTCAAAGGGCTGGCCTTGAAGACATGCTTAAAGAGATGAGAAGAAAGGATGATATACTACCCAAGTTGATGACGTCGACTGGTTCTCATGAGGATCTTTTTAAGAAAGAGATAACAAAATATGACCATATATGTGAAGAAATAGCTCAAAACATTGATGCACAAGAGCAGTTGTTGCTGCAGATTCAGGATCAAAATGATGAGTTCTCTGCTATCTTTAATCTTGAAGATTACAAAGCTTCGCGTGAAAAATGTTACAAGCAGATTGAAGCTGCCATATCAAAGTATCGAGAAATAAAAGACAACATCAATGAAGGGTTGAAATTTTATGTTACGCTGCAGGATGCAATCACAAATGTAAAGCAGCAGTGCAGTGACTTTATAATGACCAGAAACATCCAGTGCAGGGAAATGATTGAAGATGTCCAGAGACAAGTGGCTGGTCTCAGTTTCCAGGATAACAAAACCACTGCCTCCTCTAACAGTAGCTACCCTTCGATGGTACACCAGCCTCAAAGATCCTATCCTCCAGATTCTCGTCCCCAAACTGGATATTATCAGCCGCCGCCTCCCGAACAGCCATCAGCAGCTGGGTATGCTCAACCCCATCCATATGGTTCAGCACATCAGCCGCCTTCTCCATACCACATGCCACACCAATCAGCCACTCCCTATCCTCCTCAGGTGCCCCCGCAGCAACCAGCAGGCCATGACTATGGCCAACCTGCATATCCTGGATGGCGTGGCCCATACTATAATGCACATTCTCAACAACCTTCCTCGGTTCCTCGGCCTCCGTACACCATTCCTGGTCCATATCCTCCTCATCAAAGTGGCTACTATAAGCAACAATAG 2595 0.4605 MAASSSTAAATNIMLAIFEKKTNSIDLYRPLRNYIAFHYSEREAQNIEDDLQTLKQLRSDLERHSDPSLTARRDLLLSYFKALCLVETRFPISSDPDHVNTLSFVWFDAFKPKLKATQQNIHLEKAAVLFNLGAVYSQIGLSYDRNTVDGRRQASHAFIAAAGSFAYLRDNAAMKASIGSSTTVDLSVECSGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVATLNQHFDKSWLAHVQLKAALFFGEACYRYGLELHEKEEIAEEIARLRSGVDALTEARKSSKGAPAQILDAISKLEANLNRNLERAVKENDRVYLMRVPSPSSLAPLPAFSMVKPMSMNEVLDASKEKMFASLVPDSSAKSLSRYTEMVDEIIRNQAEKLQQASELTRIRLKEMELPDSIIALEGNLTLPTHLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQEMLVQTEEMLQKEAREDAQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREYAALMSILDSRPIESALPSLARPIMSLDANEDAIVGSLKQSLRQLETLGTQRAGLEDMLKEMRRKDDILPKLMTSTGSHEDLFKKEITKYDHICEEIAQNIDAQEQLLLQIQDQNDEFSAIFNLEDYKASREKCYKQIEAAISKYREIKDNINEGLKFYVTLQDAITNVKQQCSDFIMTRNIQCREMIEDVQRQVAGLSFQDNKTTASSNSSYPSMVHQPQRSYPPDSRPQTGYYQPPPPEQPSAAGYAQPHPYGSAHQPPSPYHMPHQSATPYPPQVPPQQPAGHDYGQPAYPGWRGPYYNAHSQQPSSVPRPPYTIPGPYPPHQSGYYKQQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1584 864 MobiDBLite consensus disorder prediction 762 777 - -
Lele50g1584 864 Coils Coil 309 332 - -
Lele50g1584 864 Pfam BRO1-like domain 14 393 IPR004328 -
Lele50g1584 864 Coils Coil 625 645 - -
Lele50g1584 864 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Lele50g1584 864 PANTHER PCD6 INTERACTING PROTEIN-RELATED 13 854 IPR045251 -
Lele50g1584 864 Pfam ALIX V-shaped domain binding to HIV 429 713 IPR025304 GO:0005515
Lele50g1584 864 Coils Coil 449 469 - -
Lele50g1584 864 Gene3D alix/aip1 like domains 421 702 - -
Lele50g1584 864 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
Lele50g1584 864 Gene3D alix/aip1 like domains 8 374 IPR038499 -
Lele50g1584 864 Coils Coil 576 596 - -
Lele50g1584 864 MobiDBLite consensus disorder prediction 733 761 - -
Lele50g1584 864 CDD BRO1_Alix_like_1 14 369 - -
Lele50g1584 864 CDD V_Alix_like_1 375 711 - -
Lele50g1584 864 Coils Coil 277 297 - -
Lele50g1584 864 Coils Coil 44 64 - -
Lele50g1584 864 MobiDBLite consensus disorder prediction 787 813 - -
Lele50g1584 864 SMART BRO1_2 13 397 IPR004328 -
Lele50g1584 864 MobiDBLite consensus disorder prediction 733 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1584 Lele-ChrLele50 20985938 20992617 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1584 50 20985938 20992617 Lele50g1584 50 20985938 20992617 ECH
Lele50g1584 50 20985938 20992617 Lele51g1260 51 8351237 8356857 hybridization
Lele50g1584 50 20985938 20992617 Lele52g1537 52 19363763 19370516 hybridization