Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele52g1121 | ATGGCTGCTAAACCGGGTGAATCGACGTCAAATGCTGATTTGAATCCTGTGAAAACTGGAGGAAGACTTTCGTTCGATGCTATTTGTGAAAGCGTACGGAATATGAGGCAGAATGTTAGGCCCTCTGGGAGTGACAGGAAAGACGGGCAGTTATCCTCGTTGTCGGCATTTGCCCAGAGTTTAAGAAAGGAGCCTTCAGACTCCACTGGTTTTCGGACATCGACGGTAATTGGGGAACAGGTGCATTGCCGGCTACCAAATTCACATGGTGGCTGTGCTATGCGCTATGCGATCCTAATCCGCTGCCGCCGTTACGCTTCTTCGTCTTCTGCATTTTCGCCTTCTCTGCTTCGTAAAGCTCTCCCTTTTGCCTCCTTCTCTTCTGCATCGCAATCCACATTTCAAGCATCAGCGGCCATGGTGGCCCTTGCTAAAGACGAAGCCTATCTCAGCGCAGTCATCCCCAAGCGTATCGAACTCTTCAAGGCCATCAAAGCTCAGCAACTCGCTCATCGCCAATCTCTCCCGGCCGATCCCATCAAGATAACTTTGCTGGACAAGAATGTCAAGGAAGGGAAGAAGTGGGTGACTTCACCCATGGATATTGCCAGAGAGATTTCCAAGAATTTGGCTGCAAATGCTTTGATTGCCAAAGTGAATGGGGTCCTATGGGATATGACAAGGCCCTTGGAAGGTGATTGTGAGCTTCAGCTTTTCAAATTTGAAGACGATGAAGGACGCGACACTTTTTGGCATTCTAGTGCTCACATTTTGGGGCAGGCCCTTGAGGTTGAGTATGGATGTAAGCTCTGCATTGGGCCCTGCACCACTAGAGGAGAGGGATTCTATTATGATGCGTTTTATGGTGACTTGAGTTTGAATGATGATCAATTTAAGCAGATAGAGTCTCAAACGATGAAGGCTGTTAAGGATGCACAACCATTTGAACGTATTGAAGTATTAAGGGATCAGGCACTTGAAATGTTTTCTGATAATAAGTTTAAGGTAGAAATCATCAATGATTTGCCTGCAGAGAAAACCATCACAGTATACAGATGTGGTCCGTTGGTTGATCTGTGTCGTGGACCACATATACCTAACACATCCTTTGTGAAAGCACTTGCTTGTCTAAAGGCTTCCTCAGCATACTGGAGAGGGGACAAAGACCGTGAAAGTTTACAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGAGTTTGAAGGAATATATCAAACGGTTAGAGGAAGCTAAAAAGTATGACCACAGATTGTTGGGTGTAAAACAGGAACTTATTCTTCATCATGAGTGGAGCCCAGGAAGTTGGTTTTTTCTTCCCCATGGCACACGGATTTACAACAAACTGATGGAATTTATTCGAAATCAATATAGAGAAAGAGGTTACCAAGAGGTTATATCTCCTAATGTATATAATATGGAGCTGTGGGAGCAATCTGGACATGCTGCAAACTACAAGGAGAATATGTTTGTCTTTGAGATTGAAAAGCAGGAGTTTGGGTTGAAACCAATGAATTGCCCAGGTCACTGCTTGATGTTTAAGCACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTTTTACATCGTAATGAGGCTAGTGGTGCCCTGAGTGGATTGACTCGTGTCAGGAGATTTCAGCAGGATGATGCTCATATCTTCTGCAGGGAGTCCCAGGTAAAGGAGGAAGTGAGAGGTGCCTTGGACTTTATCAATTATGCCTATAACATATTTGGTTTCACCTATGATCTGAAGCTTTCCACGAGGCCAGAGAAATACCTTGGAGATTTAGCAACATGGGAGAAGGCTGAAACTGCGCTTAAAGAAGCTTTAGATGAGTTTGGGAAGCCTTGGCAGATAAATGAAGGGGATGGTGCGTTCTATGGACCAAAGATAGATATCAGTGTATCGGATGCATTGAACAGGAAATTTCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAAAAACCAGTGATGATACACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCTATATTATTGGAGCATTATAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTGTTTGCCCTGTGTCAGAGAAATCCCAGTCTTATGCAATTGAGGTGCGAGATAAGATTCATCAAGCAGGTTATTATGTTGATGCCGATACAACTGATAGGAAGATTCAGAAGAAGGTGCGCGAAGCTCAGCTAGCACAGTACAACTACATACTGGTGGTTGGAGAGGAGGAAGCTAAGACCGGACAGGTAAGTGTACGTGTTAGAGATAACTCAGACCACAAGGTTATGAGTACTGAGAGCCTACTTAAACTCTTCAGTGATGAAGTTGAAGCTTTCCATTGA | 2445 | 0.4446 | MAAKPGESTSNADLNPVKTGGRLSFDAICESVRNMRQNVRPSGSDRKDGQLSSLSAFAQSLRKEPSDSTGFRTSTVIGEQVHCRLPNSHGGCAMRYAILIRCRRYASSSSAFSPSLLRKALPFASFSSASQSTFQASAAMVALAKDEAYLSAVIPKRIELFKAIKAQQLAHRQSLPADPIKITLLDKNVKEGKKWVTSPMDIAREISKNLAANALIAKVNGVLWDMTRPLEGDCELQLFKFEDDEGRDTFWHSSAHILGQALEVEYGCKLCIGPCTTRGEGFYYDAFYGDLSLNDDQFKQIESQTMKAVKDAQPFERIEVLRDQALEMFSDNKFKVEIINDLPAEKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYIKRLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYNKLMEFIRNQYRERGYQEVISPNVYNMELWEQSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKEEVRGALDFINYAYNIFGFTYDLKLSTRPEKYLGDLATWEKAETALKEALDEFGKPWQINEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPDRFKLEYSAEDEAKIEKPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYAIEVRDKIHQAGYYVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDNSDHKVMSTESLLKLFSDEVEAFH | 814 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele52g1121 | 814 | CDD | TGS_ThrRS | 180 | 245 | - | - | |
| Lele52g1121 | 814 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 446 | 712 | IPR006195 | - | |
| Lele52g1121 | 814 | SUPERFAMILY | Class II aaRS ABD-related | 705 | 811 | - | - | |
| Lele52g1121 | 814 | Pfam | TGS domain | 180 | 240 | IPR004095 | - | |
| Lele52g1121 | 814 | Gene3D | - | 178 | 239 | IPR012675 | - | |
| Lele52g1121 | 814 | FunFam | Threonyl-tRNA synthetase, mitochondrial | 244 | 401 | - | - | |
| Lele52g1121 | 814 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lele52g1121 | 814 | Gene3D | Bira Bifunctional Protein; Domain 2 | 401 | 709 | IPR045864 | - | |
| Lele52g1121 | 814 | Hamap | Threonine--tRNA ligase [thrS]. | 245 | 812 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele52g1121 | 814 | FunFam | Threonine--tRNA ligase mitochondrial 1 | 711 | 814 | - | - | |
| Lele52g1121 | 814 | Gene3D | - | 710 | 814 | IPR036621 | - | |
| Lele52g1121 | 814 | ProSiteProfiles | TGS domain profile. | 178 | 240 | IPR004095 | - | |
| Lele52g1121 | 814 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 498 | 707 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Lele52g1121 | 814 | CDD | ThrRS_anticodon | 717 | 806 | - | - | |
| Lele52g1121 | 814 | SUPERFAMILY | Class II aaRS and biotin synthetases | 421 | 704 | IPR045864 | - | |
| Lele52g1121 | 814 | PANTHER | THREONINE-TRNA LIGASE | 151 | 813 | - | - | |
| Lele52g1121 | 814 | FunFam | Threonine--tRNA ligase 2, cytoplasmic | 403 | 710 | - | - | |
| Lele52g1121 | 814 | SMART | tRNA_SAD_4 | 348 | 397 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lele52g1121 | 814 | TIGRFAM | thrS: threonine--tRNA ligase | 251 | 806 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele52g1121 | 814 | CDD | ThrRS_core | 421 | 717 | IPR033728 | - | |
| Lele52g1121 | 814 | SUPERFAMILY | ThrRS/AlaRS common domain | 243 | 419 | IPR018163 | GO:0000166 | |
| Lele52g1121 | 814 | SUPERFAMILY | TGS-like | 180 | 240 | IPR012676 | - | |
| Lele52g1121 | 814 | Pfam | Anticodon binding domain | 719 | 807 | IPR004154 | - | |
| Lele52g1121 | 814 | Gene3D | - | 243 | 400 | - | - | |
| Lele52g1121 | 814 | FunFam | Threonine--tRNA ligase, cytoplasmic | 178 | 239 | - | - | |
| Lele52g1121 | 814 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 348 | 397 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lele52g1121 | 814 | PRINTS | Threonyl-tRNA synthetase signature | 712 | 724 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele52g1121 | 814 | PRINTS | Threonyl-tRNA synthetase signature | 507 | 535 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele52g1121 | 814 | PRINTS | Threonyl-tRNA synthetase signature | 641 | 669 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele52g1121 | 814 | PRINTS | Threonyl-tRNA synthetase signature | 685 | 698 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele52g1121 | 814 | PRINTS | Threonyl-tRNA synthetase signature | 540 | 563 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele52g1121 | Lele-ChrLele52 | 7651486 | 7667912 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele52g1121 | 52 | 7651486 | 7667912 | Lele52g1121 | 52 | 7651486 | 7667912 | ECH | |
| Lele49g1068 | 49 | 6903600 | 6921718 | Lele52g1121 | 52 | 7651486 | 7667912 | hybridization | |
| Lele50g1157 | 50 | 7784677 | 7804494 | Lele52g1121 | 52 | 7651486 | 7667912 | hybridization |