Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1068 ATGGTAGATCTCTTCTGGATTCCTTCTCACTCTTTTGGTCTGAAGCCGATTGATAGGAAGTGGATTCGAAGTCGCCAAGCTGCTCTGATTGAACTTCTTCTAAACCCTAACCTGAAATCTCAATCGTCAGCCATGGCTCTCCTTCTCCGACTCAAAACAAGAACCAAAATGAACACCTTCACAAACCCTTCTCTCTTCCATTTCTTCTCTACTTCCAATTCCAACGATGATGAAACCGAATATACCGCCACCTCCACTGATGATACTGCTTCTACAAACCCAAACTCTCCCTTCTCTTCCTATTTCAGCGATGTCAAGAAGGTGCTCAAACGGGACCAATCCACTTCCTCCCTTTTCACGCCAAGGAATCCCTCAAATTCATCTTTCACTGCTTCAGGTTCTGCGGCTCCGACGCCATCCAAAGCTGCTAGTTTTGATGAAATTCGTAAGAACCTATCCCAGTTTCGGCGTCGTTACTCGGACCCAGATTCGACACCTCCGTCTTCACCTTCATCGAATCATATCTCATTACAGGAGATCTATAGAAGAAATATGGCTGCGAAACCGGGTGAACCGACGCCAAATGCTGGTTTGAAGCCTGAGAAAATTGGAGGAAGACTTTCATTTGACGCAATTCGTGAAAGCGTGCGGAACAGGAGGCAGAATGTTGGGCCCTCTGGGATTGACAGGAGAGATGGGCAAGTGTCATCGTTATCGGCATTTGCCCAGAGTTTAAGAAAGGAGCCTTCAGACTCCACTGGTTTTCGGACATCATCAACGGTAATTGGGGGAAAAGGTGCATTGCCTGCTTCGATTTTTGGCAAGGAGTTGAGGGAGAAAGAGAAGGGGGAGAAGTCAGATGAAATGAAGATGGAGTTACTGAAGATATATAAGCATGAGGAGTTGGGAGAGAAATTGAGAAAATTGAGGCCGCAGGCAAAAGGAGGGGACTGGTTTTCTCTTAGGGAGTTGAATGATAGATTGGTGAAATTGAGGGATTTGGAAAAGAAGGAGAATGCACAGTCAACTACTACGGGCCTTGGCCTTACCACCAAGGATTTGAGAGACATCCTGATGGAGGTGAAGATTTCTGAAAACAAGGAAAGGAAAATTACAGTGCATAGCCTTGACATCTTGGGTGAGCTTGGTCGGACTCCAAGCTTCATGCTGCAACCTCCTAAAGAACATCTTGTTGAGAAGTATTTCCACCCAGATAATATGTCTTCAGCAGAGAAGTTGAAAATTGAGCTTGCAAGAATTAGGGATGAGTTTAAGATGTCCGAGTCAGATTGCGGATCATTTCGTGTTCAAGCTGCACAACTGACAACTAAGATTAAGCATCTATCATCAGTTCTACACAAGAAGGATAAGCATTCTCGTAAAGGCTTGATAGCAATGGTTCAGAAAAGGAAAAGGTTACTAAAATACCTCAGAAGAACTGATTGGGATTCCTACTGTTTTGTGATTTCCAAGCTTGGTCTACGTGATAATCCAGATACTAACTGGGCGGCAAAAACAACAGGACCAAATCCACATGGTGGCTGTGCTATGTGCTATGCGATACTAATCCGCTTCCGCCGTTACGCTTCTTCGTCTTCTGCATTTTCCCCTTCTCTGCTTCGTAAAGCTCTCCCTTTTGCCTCCTTCTCCTCCGCATCGCAATCCACATTTCAAGCATCAGCAGCCATGGTAGCTCATGCTAAAGACGAAGCCTATCTCGACACTGTCATCCCCAAGCGTATCGAACTCTTCGAGGCCATTAAAGCTCAGCAACTCGCTCATCGCCAATCCTTCCCTGCCGATCCCATCAAGATAACTTTGCTGGACAAGAATGTCAAGGAAGGGAAGAGGTGGGTGACTTCACCCATGGATATTGCCAGAGAGATTTCCAAGAATTTGGCTGCAAATGCTTTGATTGCCAAAGTGAATGGTGTCCTATGGGATATGACAAGGCCCTTGGAAGGTGATTGTGAGCTTCAGCTTTTCAAATTTGAAGACGATGAAGGACGCGACACTTTCTGGCATTCCAGTGCTCACATTTTGGGGCAGGCCCTTGAGGTGGAGTATGGATGTAAGCTCTGCATTGGCCCCTGCACCACTAGAGGAGAGGGATTCTATTATGATGGGTTTTATGGTGACTTGAGTTTGAATGATGATCACTTTAAGCAGATAGAGTCTCAAACTACGAAGGCTGTTAAGGATGCACAACCATTTGAACGTATTGAAGTATCAAGGGATCAGGCACTTGAAATGTTTTCTGATAATAAGTTTAAGGTAGAAATCATCAAAGATTTGCCTGCAGACAAAACCATCACAGTATACAGATGTGGTCCGTTGGTTGATCTGTGTCGTGGACCACACATACCTAACACATCCTTTGTGAAAGCACTTGCTTGTCTAAAGGCTTCCTCAGCATACTGGAGAGGGGACAAAGACCGTGAAAGTTTACAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGAGTTTGAAGGAATATGTCAAACGGTTGGAGGAAGCTAAAAAGTATGACCACAGATTGTTGGGTGTAAAACAGGAACTTATTCTTCATCATGAGTGGAGCCCAGGAAGTTGGTTTTTTCTTCCCCATGGCACACGGATTTACAACAAACTGATGGAATTTATTCGAAATCAATACAGAGAAAGAGGTTACCAAGAGGTTATATCTCCTAATGTATATAATATGGAGCTGTGGGAGCAATCTGGACATGCTGCAAACTACAAGGAGAATATGTTTGTCTTTGAGATAGAAAAGCAGGAGTTTGGGTTGAAACCAATGAATTGCCCAGGTCACTGCTTGATGTTTAAGCACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTTTTACATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTGACTCGTGTCAGGAGATTTCAGCAGGATGATGCCCATATCTTCTGCAGGGAGTCCCAGGTAAAGGAGGAAGTGAGAGGCTCCTTGGATTTTGTCAATTATGCCTATAACATATTTGGTTTCACCTATGATCTGAAGCTTTCCACGAGGCCAGAGAAATACCTTGGAGATTTAGCAACATGGGAGAAGGCTGAAACTGCCCTTAAAGAAGCTTTAGATGAGTTTGGGAAGCCTTGGCAGATAAATGAAGGGGATGGTGCATTTTATGGACCAAAGATAGATATCAGTGTATCAGATGCATTGAACAGGAAATTTCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAAAAACCCGTAATGATACACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCTATATTATTGGAGCATTACAAGGGCAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTGTTTGCCCTGTGTCAGAGAAATCACAATCTTATGCAATTGAGGTGCGAGATAAGATTCATCAAGCAGGTTATTATGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTGCGTGAAGCTCAGTTAGCACAGTACAACTACATACTGGTGGTTGGAGAGGAGGAAGCTAAGACCGGACAGGTAAGTGTACGGGTTAGAGATAACTCAGACCACAGGGTTATGAGTACTGAGAGCCTACTCAAACTCTTCAGTGATGAGGTTGCAGTCTTCCATTGA 3714 0.4432 MVDLFWIPSHSFGLKPIDRKWIRSRQAALIELLLNPNLKSQSSAMALLLRLKTRTKMNTFTNPSLFHFFSTSNSNDDETEYTATSTDDTASTNPNSPFSSYFSDVKKVLKRDQSTSSLFTPRNPSNSSFTASGSAAPTPSKAASFDEIRKNLSQFRRRYSDPDSTPPSSPSSNHISLQEIYRRNMAAKPGEPTPNAGLKPEKIGGRLSFDAIRESVRNRRQNVGPSGIDRRDGQVSSLSAFAQSLRKEPSDSTGFRTSSTVIGGKGALPASIFGKELREKEKGEKSDEMKMELLKIYKHEELGEKLRKLRPQAKGGDWFSLRELNDRLVKLRDLEKKENAQSTTTGLGLTTKDLRDILMEVKISENKERKITVHSLDILGELGRTPSFMLQPPKEHLVEKYFHPDNMSSAEKLKIELARIRDEFKMSESDCGSFRVQAAQLTTKIKHLSSVLHKKDKHSRKGLIAMVQKRKRLLKYLRRTDWDSYCFVISKLGLRDNPDTNWAAKTTGPNPHGGCAMCYAILIRFRRYASSSSAFSPSLLRKALPFASFSSASQSTFQASAAMVAHAKDEAYLDTVIPKRIELFEAIKAQQLAHRQSFPADPIKITLLDKNVKEGKRWVTSPMDIAREISKNLAANALIAKVNGVLWDMTRPLEGDCELQLFKFEDDEGRDTFWHSSAHILGQALEVEYGCKLCIGPCTTRGEGFYYDGFYGDLSLNDDHFKQIESQTTKAVKDAQPFERIEVSRDQALEMFSDNKFKVEIIKDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYVKRLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYNKLMEFIRNQYRERGYQEVISPNVYNMELWEQSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKEEVRGSLDFVNYAYNIFGFTYDLKLSTRPEKYLGDLATWEKAETALKEALDEFGKPWQINEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPDRFKLEYSAEDEAKIEKPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYAIEVRDKIHQAGYYVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDNSDHRVMSTESLLKLFSDEVAVFH 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1068 1237 PANTHER THREONINE-TRNA LIGASE 574 1234 - -
Lele49g1068 1237 SUPERFAMILY Class II aaRS ABD-related 1128 1232 - -
Lele49g1068 1237 Hamap Threonine--tRNA ligase [thrS]. 668 1235 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lele49g1068 1237 Gene3D - 413 460 - -
Lele49g1068 1237 Pfam Anticodon binding domain 1142 1230 IPR004154 -
Lele49g1068 1237 Pfam Ribosomal protein S15 419 495 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele49g1068 1237 Coils Coil 321 341 - -
Lele49g1068 1237 Pfam TGS domain 603 663 IPR004095 -
Lele49g1068 1237 SMART Ribosomal_S15_2 417 495 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele49g1068 1237 SMART tRNA_SAD_4 771 820 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lele49g1068 1237 Gene3D - 462 497 - -
Lele49g1068 1237 Gene3D - 1133 1235 IPR036621 -
Lele49g1068 1237 FunFam Threonine--tRNA ligase mitochondrial 1 824 952 - -
Lele49g1068 1237 PRINTS Threonyl-tRNA synthetase signature 1064 1092 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lele49g1068 1237 PRINTS Threonyl-tRNA synthetase signature 1135 1147 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lele49g1068 1237 PRINTS Threonyl-tRNA synthetase signature 963 986 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lele49g1068 1237 PRINTS Threonyl-tRNA synthetase signature 930 958 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lele49g1068 1237 PRINTS Threonyl-tRNA synthetase signature 1108 1121 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lele49g1068 1237 Gene3D Bira Bifunctional Protein; Domain 2 824 1132 IPR045864 -
Lele49g1068 1237 FunFam Probable threonine--tRNA ligase, cytoplasmic 961 1133 - -
Lele49g1068 1237 CDD TGS_ThrRS 603 668 - -
Lele49g1068 1237 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 771 820 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lele49g1068 1237 TIGRFAM thrS: threonine--tRNA ligase 674 1229 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lele49g1068 1237 TIGRFAM S15_bact: ribosomal protein uS15 418 495 IPR005290 GO:0003735|GO:0005840|GO:0006412
Lele49g1068 1237 MobiDBLite consensus disorder prediction 113 139 - -
Lele49g1068 1237 SUPERFAMILY S15/NS1 RNA-binding domain 417 496 IPR009068 -
Lele49g1068 1237 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 869 1135 IPR006195 -
Lele49g1068 1237 MobiDBLite consensus disorder prediction 113 145 - -
Lele49g1068 1237 FunFam Threonine--tRNA ligase mitochondrial 1 1134 1237 - -
Lele49g1068 1237 Hamap 30S ribosomal protein S15 [rpsO]. 407 496 IPR005290 GO:0003735|GO:0005840|GO:0006412
Lele49g1068 1237 FunFam Threonyl-tRNA synthetase, mitochondrial 667 824 - -
Lele49g1068 1237 CDD Ribosomal_S15p_S13e 419 493 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lele49g1068 1237 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 921 1130 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lele49g1068 1237 SUPERFAMILY ThrRS/AlaRS common domain 666 842 IPR018163 GO:0000166
Lele49g1068 1237 Gene3D - 666 823 - -
Lele49g1068 1237 SUPERFAMILY TGS-like 603 663 IPR012676 -
Lele49g1068 1237 CDD ThrRS_core 844 1140 IPR033728 -
Lele49g1068 1237 Coils Coil 410 430 - -
Lele49g1068 1237 CDD ThrRS_anticodon 1140 1229 - -
Lele49g1068 1237 FunFam Threonine--tRNA ligase, cytoplasmic 601 662 - -
Lele49g1068 1237 SUPERFAMILY Class II aaRS and biotin synthetases 844 1127 IPR045864 -
Lele49g1068 1237 MobiDBLite consensus disorder prediction 74 97 - -
Lele49g1068 1237 Gene3D - 601 662 IPR012675 -
Lele49g1068 1237 ProSiteProfiles TGS domain profile. 601 663 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1068 Lele-ChrLele49 6903600 6921718 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1068 49 6903600 6921718 Lele49g1068 49 6903600 6921718 ECH
Lele49g1068 49 6903600 6921718 Lele51g1083 51 7003572 7017200 hybridization
Lele49g1068 49 6903600 6921718 Lele52g1121 52 7651486 7667912 hybridization