Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele50g1157 | ATGAGTAGAAACTGTGGCCTTTATGATGTTTTGTATGATCATATCCATGATACCAAGTTCAAGGAAGTGACGAAACTTACATTAATGTTGTGGATGGGTGATGATGTTTTGGTGCTTACTGCATTGCTAGATATGTATTATAATGTGGGTGAAATTAATTCAACGTCTGATTCTATTGATAAGAGACTCTATACTACTGGATTTTCCCAATCTCCTATGGTGGAAGAAAAGTTAGGAATTGTTAGAAAAATCTATTCTATACCAAATCCTCCTGGTGGTTGTGCTATGTGCTATGCGATCCTAATACGCTGCCGCCGTTACGCTTCTTCATCTTCTGCATTTTCGCCTTCTTTGCTTCGTAAAGCTCTACCTTTTGCCTCCTTCTCTTCTGCATCGCAATCCACATTTCAAGCATCAGCTGCCATGGTGGCCCTTGCTAAAGACGAAGCCTATCTCAGCACAGTCATCCCCAAGCGTATCGAACTCTTCGAGGCCATCAAAGCTCAGCAACTCTCTCATCGCCAATCCCTCCCGGCCGATCCCATCAAGATAACTTTGCCGGACAAGAATGTCAAGGAAGGGAAGAAGTGGGTGACTTCACCCATGGATATTGCCAGAGAGATTTCCAAGAATTTGGCTGCAAATGCTTTGATTGCCAAAGTGAATGGGGTCCTATGGGATATGACAAGGCCCTTGGAAGGTGATTGTGAGCTTCAGCTTTTCAAATTTGAAGACGATGAAGGACGCGACACTTTTTGGCATTCTAGTGCTCACATTTTGGGGCAGGTGCTGTCCTTGAGGCTTGGTTTGTATGAAAATTCAATCTTTGACTCGAAATGGACTGACATTTACTCGTTCTTGCGCAGGCCCTTGAGGTGGAGTATGGATGTAAGCTCTGCATTGGGCCCTGCACCACTAGAGGAGAGGTTCAGAAAGTGTGAAAAATATAATGCTTGTGCCATGTATTATATAGAGATATTCAGAGCTGTAAAGATATGCTTGCTTTCCTTCTCATCTTTGGCATTAAAAGTTCTTGATTGCCCTTGTGGTGGGATGAAGGAGAAGAATGGGTTGATAAGACTAAATGCATCAAATGTCCAACTGGTAGAAATCATCAACGATTTGCCTGCAGAGAAAACCATCACAGTATATAGATGTGGTCCGTTAGTTGATCTGTGTCGTGGACCACATATACCTAACACATCCTTTGTGAAAGCACTTGCATGTCTAAAGGCTTCTTCAGCATACTGGAGAGGGGACAAAGACCGTGAAAGTTTACAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGAGTTTGAAGGAATATATCAAACAGTTGGAAGAAGCTAAAAAGTATGACCACAGATTGTTGGGTGTAAAACAGGAACTTATTCTTCATCATGAGTGGAGCCCAGGAAGTTGGTTTTTTCTTCCCCATGGCACACGGATTTACAACAAACTAATGGAATTTATTCGAAATCAATATAGAGAAAGAGGTTACCAAGAGGTTATATCTCCTAATGTATATAATATGGAGTTGTGGGAGCAATCTGGACATGCTGCAAACTACAAGGAGAATATGTTTGTCTTTGAGATTGAAAAGCAGGAGTTTGGGTTGAAACCAATGAATTGCCCAGGTCACTGCTTGATGTTTAAGCACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTTTTACATCGTAACGAGGCTAGTGGTGCCCTGAGTGGATTGACTCGTGTCAGGAGATTTCAGCAGAAAAGCAATAAGTGGGAGCTAGTGTTGGATGATGCTCATATCTTCTGCAGGGAGTCCCAGGTAAAGGAGGAAGTGAGAGGCGCCTTGGAGTTTATCAATTATGCCTATAACATATTTGGTTTCACCTATGATCTGAAGCTTTCCACGAGGCCAGAGAAATACCTTGGAGATTTAGCAACATGGGAGAAGGCTGAAACTGCGCTTAAAGAAGCTTTAGATGAGTTTGGGAAGCCTTGGCAGATAAATGAAGGGGATGGTGCGTTCTATGGACCAAAGATAGATATCAGTGTATCGGATGCATTGAACAGGAAATTTCAGTGTGCAACTTTGCAGCTTGACTTCCAACTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAAAAACCAGTGATGATACACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCTATATTATTGGAGCATTATAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTGTTTGCCCTGTGTCAGAGAAATCACAGTCTTATGCAATTGAGGTGCGAGATAAGATTCATCAAGCAGGTTATTATGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTGCGCGAAGCTCAGCTAGCACAGTACAACTACATACTGGTGGTTGGAGAGGAGGAAGCTAAGACAGGACAGGTAAGTGTACGTGTTAGAGATAACTCAGACCACAAGGTTATGAGTACTGAGAGCCTACTCAAACTCTTCAGTGATGAAGTGGCAGCTTTCCATTGA | 2571 | 0.4263 | MSRNCGLYDVLYDHIHDTKFKEVTKLTLMLWMGDDVLVLTALLDMYYNVGEINSTSDSIDKRLYTTGFSQSPMVEEKLGIVRKIYSIPNPPGGCAMCYAILIRCRRYASSSSAFSPSLLRKALPFASFSSASQSTFQASAAMVALAKDEAYLSTVIPKRIELFEAIKAQQLSHRQSLPADPIKITLPDKNVKEGKKWVTSPMDIAREISKNLAANALIAKVNGVLWDMTRPLEGDCELQLFKFEDDEGRDTFWHSSAHILGQVLSLRLGLYENSIFDSKWTDIYSFLRRPLRWSMDVSSALGPAPLEERFRKCEKYNACAMYYIEIFRAVKICLLSFSSLALKVLDCPCGGMKEKNGLIRLNASNVQLVEIINDLPAEKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYIKQLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYNKLMEFIRNQYRERGYQEVISPNVYNMELWEQSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQKSNKWELVLDDAHIFCRESQVKEEVRGALEFINYAYNIFGFTYDLKLSTRPEKYLGDLATWEKAETALKEALDEFGKPWQINEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPDRFKLEYSAEDEAKIEKPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYAIEVRDKIHQAGYYVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDNSDHKVMSTESLLKLFSDEVAAFH | 856 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele50g1157 | 856 | PRINTS | Threonyl-tRNA synthetase signature | 683 | 711 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele50g1157 | 856 | PRINTS | Threonyl-tRNA synthetase signature | 573 | 596 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele50g1157 | 856 | PRINTS | Threonyl-tRNA synthetase signature | 754 | 766 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele50g1157 | 856 | PRINTS | Threonyl-tRNA synthetase signature | 727 | 740 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele50g1157 | 856 | PRINTS | Threonyl-tRNA synthetase signature | 540 | 568 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele50g1157 | 856 | SUPERFAMILY | Class II aaRS ABD-related | 747 | 852 | - | - | |
| Lele50g1157 | 856 | SUPERFAMILY | Class II aaRS and biotin synthetases | 454 | 746 | IPR045864 | - | |
| Lele50g1157 | 856 | Hamap | Threonine--tRNA ligase [thrS]. | 247 | 854 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele50g1157 | 856 | FunFam | Threonine--tRNA ligase mitochondrial 1 | 434 | 562 | - | - | |
| Lele50g1157 | 856 | Gene3D | - | 180 | 241 | IPR012675 | - | |
| Lele50g1157 | 856 | TIGRFAM | thrS: threonine--tRNA ligase | 371 | 848 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele50g1157 | 856 | SMART | tRNA_SAD_4 | 381 | 430 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lele50g1157 | 856 | Pfam | TGS domain | 182 | 242 | IPR004095 | - | |
| Lele50g1157 | 856 | SUPERFAMILY | ThrRS/AlaRS common domain | 364 | 452 | IPR018163 | GO:0000166 | |
| Lele50g1157 | 856 | FunFam | Probable threonine--tRNA ligase, cytoplasmic | 570 | 752 | - | - | |
| Lele50g1157 | 856 | FunFam | Threonine--tRNA ligase, cytoplasmic | 180 | 241 | - | - | |
| Lele50g1157 | 856 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 479 | 754 | IPR006195 | - | |
| Lele50g1157 | 856 | FunFam | Threonine--tRNA ligase mitochondrial 1 | 753 | 856 | - | - | |
| Lele50g1157 | 856 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 531 | 749 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Lele50g1157 | 856 | PANTHER | THREONINE-TRNA LIGASE | 357 | 855 | - | - | |
| Lele50g1157 | 856 | CDD | ThrRS_core | 454 | 759 | IPR033728 | - | |
| Lele50g1157 | 856 | CDD | ThrRS_anticodon | 759 | 848 | - | - | |
| Lele50g1157 | 856 | Gene3D | - | 353 | 433 | - | - | |
| Lele50g1157 | 856 | CDD | TGS_ThrRS | 182 | 247 | - | - | |
| Lele50g1157 | 856 | Pfam | Anticodon binding domain | 761 | 849 | IPR004154 | - | |
| Lele50g1157 | 856 | Gene3D | Bira Bifunctional Protein; Domain 2 | 434 | 751 | IPR045864 | - | |
| Lele50g1157 | 856 | SUPERFAMILY | TGS-like | 182 | 242 | IPR012676 | - | |
| Lele50g1157 | 856 | ProSiteProfiles | TGS domain profile. | 180 | 242 | IPR004095 | - | |
| Lele50g1157 | 856 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 381 | 430 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lele50g1157 | 856 | Gene3D | - | 752 | 855 | IPR036621 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele50g1157 | Lele-ChrLele50 | 7784677 | 7804494 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele50g1157 | 50 | 7784677 | 7804494 | Lele50g1157 | 50 | 7784677 | 7804494 | ECH | |
| Lele50g1157 | 50 | 7784677 | 7804494 | Lele51g1083 | 51 | 7003572 | 7017200 | hybridization | |
| Lele50g1157 | 50 | 7784677 | 7804494 | Lele52g1121 | 52 | 7651486 | 7667912 | hybridization |