Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1113 ATGACCGAAGATAGCGTTGTTGAGTCAAGCGATTTGCCGGTGAAGAGGCAGAGGGAAGAAGATGAAGAGAATGGGGTCTCTCCTTCTACCGTTTCCATGGAGACAGACATGAATGGTGACAAGCATCCTGATTTTATGTCTTCATTGATTCCTGGGTGGTTCTCTGAAGTTAGCTCAATGTGGCCTGGAGAGGCACACTCTTTAAAAGTTGAAAAGATCTTATTTCAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGGTTTTGGTTATTGGTGGGGGAGATGGAGGGGTCTTGCGGGAAGTCGCACGGCATTCTTCTGTCGAGAAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGAAGTAGCTGTAGGGTTTGATGATCCACGTGTGACACTTAATATTGGTGATGGAGTTGCTTTTTTGAAAGCTGTTCCATCAGGAACTTATGATGTAATCATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGTTGCTAAGGCTCTTCGTCCTGGAGGAGTTGTGAGCACTCAGGCTGAAAGTATATGGCTTCATATGCGTATTATTGAGGGCCTTGTTGACAATTGTCGCCAGATATTTAAAGGCTCTGTTGACTATGCTTGGACTTCAGTTCCCACATACCCTAGTGGGGTAATTGGTTTTATGCTTTGCTCGACCGAAGGACCTCCGGTTGATTTCAAGCATCCAGTGAACCCCATAGGTGCAAATGATAATCAGAAATCAATAAGGCCACTGAAGTTTTACAACTCTGAGATTCATTCAGCGGCATTTTGCCTTCCATCGTTTGCAAGGAGAGTGATGGATTCTAAAGCGAATTGA 903 0.4374 MTEDSVVESSDLPVKRQREEDEENGVSPSTVSMETDMNGDKHPDFMSSLIPGWFSEVSSMWPGEAHSLKVEKILFQGKSDYQNVMVFQVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPEVAVGFDDPRVTLNIGDGVAFLKAVPSGTYDVIIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMRIIEGLVDNCRQIFKGSVDYAWTSVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIGANDNQKSIRPLKFYNSEIHSAAFCLPSFARRVMDSKAN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1113 300 Pfam Spermidine synthase tetramerisation domain 52 88 IPR035246 -
Lele52g1113 300 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 89 102 IPR030373 -
Lele52g1113 300 MobiDBLite consensus disorder prediction 1 37 - -
Lele52g1113 300 Hamap Polyamine aminopropyltransferase [speE]. 4 296 IPR001045 GO:0003824
Lele52g1113 300 Pfam Spermine/spermidine synthase domain 88 255 - -
Lele52g1113 300 Gene3D Vaccinia Virus protein VP39 74 300 IPR029063 -
Lele52g1113 300 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 89 247 IPR030374 -
Lele52g1113 300 MobiDBLite consensus disorder prediction 9 25 - -
Lele52g1113 300 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 296 IPR029063 -
Lele52g1113 300 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 88 IPR030374 -
Lele52g1113 300 PANTHER SPERMIDINE/SPERMINE SYNTHASE 44 88 IPR001045 GO:0003824
Lele52g1113 300 CDD AdoMet_MTases 89 196 - -
Lele52g1113 300 FunFam Spermidine synthase 84 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1113 Lele-ChrLele52 7554409 7557959 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1113 52 7554409 7557959 Lele52g1113 52 7554409 7557959 ECH
Lele49g1060 49 6825017 6828607 Lele52g1113 52 7554409 7557959 hybridization
Lele50g1146 50 7659992 7663907 Lele52g1113 52 7554409 7557959 hybridization