Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1060 ATGGCCGAAGAGAGCGTCGTTGAGTCTAGCGATTTGCCTGTGAAGAGGCAGAGGGAAGAGGACGAAGAGAATGGGGTCTCTGCTTCTACCATTTCCATGGAGACAGACATGAATGGTGACAAGAATCCTGATTTTATGTCTTCAGTTATTCCCGGGTGGTTCTCCGAAGTTAGCTCAATGTGGCCTGGAGAGGCACACTCTTTAAAAGTTGAAAAGATCTTATTTCAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGTCATCATCATATGGAAAGGTTCTTGTTTTGGATGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTCTGTGCTCAATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGGGGAGATGGTGGGGTCTTGCGGGAAGTCGCACGGCATTCTTCTGTCGAGAAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTCTCGAAACAATTTTTCCCTGAAGTAGCTGTAGGGTTTGATGATCCGCGTGTGACACTTCATATTGGTGATGGAGTCGCTTTTTTGAGAGATGCTCCAACAGGAACTTATGATGCAATTATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGCTGATAAGGCTCTTCTTCCTGGAGGAGTTGTGAGCACTCAGGCTGAAAGTATATGGCTTCATATGCATATTATTGAGGGCCTTGTTGATAATTGTCGCCAGATATTTAAAGGCTCTGTTGAGTATGCTTGGACTTCAGTTCCCACATACCCTAGTGGGGTAATTGGTTTTATGCTTTGCTCGACCGAAGGACCTCCGGTTGATTTCAAGCATCCAGTGAACCCCATAGATGCAAATGATAATCAGAAATCAATAAGGCCACTGAAGTTTTACAACTCTGAGCGTCATTTTGCCTTCCATCGTTTGCAAGGAGAGCGATCGATTCTAAAGCGAACTGAGGATATTCTCCAGAGTCTGGAGGAGCATGTGTAG 1050 0.441 MAEESVVESSDLPVKRQREEDEENGVSASTISMETDMNGDKNPDFMSSVIPGWFSEVSSMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPEVAVGFDDPRVTLHIGDGVAFLRDAPTGTYDAIIVDSSDPIGPAQELFEKPFFELADKALLPGGVVSTQAESIWLHMHIIEGLVDNCRQIFKGSVEYAWTSVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDANDNQKSIRPLKFYNSERHFAFHRLQGERSILKRTEDILQSLEEHV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1060 349 MobiDBLite consensus disorder prediction 1 40 - -
Lele49g1060 349 FunFam Spermidine synthase 1 104 339 - -
Lele49g1060 349 Coils Coil 335 349 - -
Lele49g1060 349 FunFam Spermidine synthase 1 44 103 - -
Lele49g1060 349 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 130 143 IPR030373 -
Lele49g1060 349 CDD AdoMet_MTases 129 237 - -
Lele49g1060 349 TIGRFAM speE: spermidine synthase 53 324 IPR001045 GO:0003824
Lele49g1060 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 326 IPR029063 -
Lele49g1060 349 Pfam Spermidine synthase tetramerisation domain 52 106 IPR035246 -
Lele49g1060 349 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 288 IPR030374 -
Lele49g1060 349 MobiDBLite consensus disorder prediction 9 25 - -
Lele49g1060 349 Pfam Spermine/spermidine synthase domain 109 296 - -
Lele49g1060 349 Gene3D Vaccinia Virus protein VP39 104 333 IPR029063 -
Lele49g1060 349 PANTHER SPERMIDINE/SPERMINE SYNTHASE 44 329 IPR001045 GO:0003824
Lele49g1060 349 Gene3D Spermidine synthase, tetramerisation domain 45 103 IPR037163 -
Lele49g1060 349 Hamap Polyamine aminopropyltransferase [speE]. 52 343 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1060 Lele-ChrLele49 6825017 6828607 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1060 49 6825017 6828607 Lele49g1060 49 6825017 6828607 ECH
Lele49g1060 49 6825017 6828607 Lele51g1072 51 6920112 6923655 hybridization
Lele49g1060 49 6825017 6828607 Lele52g1113 52 7554409 7557959 hybridization