Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1146 ATGCTGCAAATTGCGAAGCGTACCAAATCCCAAAGGGCAAAGGCAAAAATTGAGAGCGCTATCATTTTCGTTGTACTTGGCAAAAATTCTATCAAATCAAAAAATAGCTTTTGGAGTTCCAAAGGCTCAATAATTGAGATTTGCTTTGACGCAACTAGGTGGGAAGCCATGACCAAAGATAGCGTTGTTGAGTCAAGCGATTTGCCGGTGAAGAGGCAGAGGGAAGAAGATGAAGAGAATGGGGTCTCTCCTTCTACCGTTTCCATGGAAACAGACATGAATGGTGACAAGCATCCCGATTTTATGTCTTCAGTGATTCCTGGGTGGTTCTCTGAAGTTAGCTCACTGTGGCCTGGAGAGGCACACTCTTTAAAAGTTGAAAAGATCTTATTTCAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGTCATCATCATACGGAAAGGTTCTTGTTTTGGATGGTGTAATTCAACTCACTGAAAGAGATGAATGTGCCTACCAAGAAATGATCACACATCTTCCTCTGTGCTCAATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGGGGAGATGGAGGGGTCCTGCGGGAAGTCGCACGGCATTCTTCTGTCGAGAAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTATCCAAACAATTTTTCCCTGAAGTATCTGTAGGGTTTGATGATCCACGTGTGACAATTAATATTGGTGATGGAGTTGTTTTTTTGAAAGCTGTTCCATCAGGAACTTATGATGCAATCATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGTTGCTAAGGCTCTTCGTCCTGGAGGAGTTGTGAGCACTCAGGCTGAAAGTATATGGCTTCATATGCATATTATTGAGGGCCTTGTTGACAATTGTCGCCAGATATTTAAAGGCTCTGTTGACTACGCTTGGACTTCAGTTCCCACATACCCTAGTGGGGTAATTGGTTTTATGCTTTGCTCGACCGAAGGACCTCCGGTTGATTTCAAGCATCCTGTGAACCCCATAGATGCAAATGATAATCAGAAATCAATAAGGCCGCTGAAGTTTTACAACTCTGAGATTCATTCAGCGGCATTTTGCCTTCCATCGTTTGCAAGGAGAGTGATGGATTCTAAAGCGAATTGA 1194 0.4263 MLQIAKRTKSQRAKAKIESAIIFVVLGKNSIKSKNSFWSSKGSIIEICFDATRWEAMTKDSVVESSDLPVKRQREEDEENGVSPSTVSMETDMNGDKHPDFMSSVIPGWFSEVSSLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPEVSVGFDDPRVTINIGDGVVFLKAVPSGTYDAIIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMHIIEGLVDNCRQIFKGSVDYAWTSVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDANDNQKSIRPLKFYNSEIHSAAFCLPSFARRVMDSKAN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1146 397 FunFam Spermidine synthase 1 160 397 - -
Lele50g1146 397 Gene3D Spermidine synthase, tetramerisation domain 101 159 IPR037163 -
Lele50g1146 397 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 186 199 IPR030373 -
Lele50g1146 397 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 105 393 IPR029063 -
Lele50g1146 397 Pfam Spermine/spermidine synthase domain 165 352 - -
Lele50g1146 397 TIGRFAM speE: spermidine synthase 109 387 IPR001045 GO:0003824
Lele50g1146 397 MobiDBLite consensus disorder prediction 65 93 - -
Lele50g1146 397 CDD AdoMet_MTases 185 293 - -
Lele50g1146 397 MobiDBLite consensus disorder prediction 65 81 - -
Lele50g1146 397 Hamap Polyamine aminopropyltransferase [speE]. 108 393 IPR001045 GO:0003824
Lele50g1146 397 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 107 344 IPR030374 -
Lele50g1146 397 Pfam Spermidine synthase tetramerisation domain 108 162 IPR035246 -
Lele50g1146 397 FunFam Spermidine synthase 1 100 159 - -
Lele50g1146 397 PANTHER SPERMIDINE/SPERMINE SYNTHASE 90 395 IPR001045 GO:0003824
Lele50g1146 397 Gene3D Vaccinia Virus protein VP39 160 397 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1146 Lele-ChrLele50 7659992 7663907 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1146 50 7659992 7663907 Lele50g1146 50 7659992 7663907 ECH
Lele50g1146 50 7659992 7663907 Lele51g1072 51 6920112 6923655 hybridization
Lele50g1146 50 7659992 7663907 Lele52g1113 52 7554409 7557959 hybridization