Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0957 ATGGAGATCCATCCTCCTGAAATCCTCCAAGCTAGGTTTTCAGATTCTGTTCTTGGCGGAGTACCCTTCGGGGGCGCTTCAACGACTTCACAAATGCCGGTTTCGGAGGGTGCTCTAACTGAGCCTTCGTCTTCCAATTCTGGGAGTCTTGATGACCGTTCTTTGGTTCCATATGTACCAAATCAGGTGGGGATTTCGGCGTCTTTATCCAGTGAAGCCCAAAAGGAGCGCATCAATGCGTCTTTATCATCCAATATAAGTGTATCTCATCCTAATTTAGGTTCCAAAACCCTAGATGAGTGTTCACCTTCTACATCAGTAGAAATCTCAGCGCCTTTGGTGCCTCAGTTAACAACTACTCACGGGTCGTCACTGCCCATGGCAACGTCTGCCGAGAATAATTATTACCTCCCATTCTGTGATTCTGGTAGGGAAGATCGAGATGATGTTTCAGAGCCAATTCGATCGGTAAACGATTTATCATATTATCCGGCTTTATCATCTCCCAAGCGGTGGCCTTCGTGCTCCTCATCTTCACAGCTTCCCCCTAAAGTAACTTGGAATTCCGAGCTTACTTCCGATGAAATCTTGGTCCCATCTGAAGATACTGGCACGCCTTTGAACAATGGGTTTAATGTTTCCGGAATTATACCCTTCACGGTGTTGTTTGTATCACAGGGTGCTGGCCTTGAAAATCTTGGCAATACATGCTTTCTCAATGTTATCTTGCAATGCCTTACACATATTGTGCCACTAATTCGGGGTCTTTGTACTTGCAGTCATACTGCACCTTGTGAAAGTGGTATTGATGGATTCTGTGTTCTTTGTGTTCTTCGTGATCACATTGAACTGTCGTTGAAGTCTTCTGGAAGAATTATCTCACCTTGGAAACTTGTTGACAATTTGAATTCTCCAATGGATGAGTACTTCCAAGATGCTGTTATCCATGACCCACTATTAGATTTGTCTTCTTTTTTTACAAGATACCAGCAGGAGGATGCCCATGAATTCCTGCAGTGCTTCTTAGATAAACTGGAAAGATGCTTTCTAGATTTAAAGAGAAATAGCAAGAGTGGTGACCAAGTTGACAATCTAGTGGAGAAAATATTTGGAGGTCGCCTCATCAGCAAACTTCAATGTTGTAACTGTGGTCACTGTTCAGACACTTATGAGCCTCTCATTGACTTTAGCTTGGAGATAGAAAATGTGGACAGCCTTCCAAGTGCTTTAGCATCTTTCACTAAGGTAGAAAAGATAGATGCTACGTTTACATGTGATAGCTGCAAGGAAGAAGTATCCATGGAGAAGAGGCTTATTTTGGATCAGACACCTTCAGTTGCAGCATTTCATTTTAAGAGATTTAAGACAGATGGGATATATGTTGAAAAGATTGATAATCATGTGGATTTCCCTCTAGAATTGGATTTGCAGCCTTATACTAATTGTAATGAGAGCAATAATGAAGCACTGAAATATGACCTGTATGCCATTGTGGTGCATGTTGGGGTTTCATCTACGTCTGGGCATTACTTTTGCTTTGTCCGCACTGCACCTGACATGTGGTATAGGCTGGATGACTCCAAGGTTACCAGAGTTGCAGGAGGTTTTGTGCTGTCTCAGGAAGCATACATATTACTCTATGCTCGACAGGGCACACCATGGCTATCTTCAATAATGGATGCTTCAAGCCTATGCTTGGTTCCCAGTGTTTTTAATACTTCACCCAAGTCAGTTTTAGACAATGTTGATGGCTTGTATCGCCCTAATCCTAATGTAGCAGATTTTGCAAGTGGTGGTGCAAATGAACCCCGAGGAGTTTCCCAGAAGATGCCTGGTTATTCTGGTGGAGGATTTAATGAAATCCTCAATGATTATATGGATTCTTATCTTGAAGATGGTCAAGTTCAGTTTGAGCTAAATCCAACTACTGTTAATTCTAATGGCTCTAAAGGAGAAACCACCCATGTCCAAGTACGATGCAATGAGAGAAAAGGTTCCCTGCCCTCGCTTGACGAAAATGGTCATCAGGAGGCTGTTGATATTAGAGAGAATGATGTTTTCCATTCTTTAACCCCACCCAGCTCCCCATGTCCAGATTCTAATTCTGCAGATATTACTTGTCGCATTCCACGGGATCATTTGAAGATGGAGAATCATGAGAGGTGTAAAAGACCATTAAATAAGACCTTGGATGATTCTGAGAGGAAAGAAGCTACGAGATATCTTAACAAGAATGTGCATGGTTCAAGGAGATCAAAACTCCTGGGTGCCATGGCTGGGCCCTCCCATGAAAGTCATTCTATTAAAAAGAGGAAGAAATTGGGTTCTCAACTATGTAAGAAATCCATACCTCCTGGTGACCGTAAGAAATCAAATCATAGATCTGTCATGTGTGCTTCAAGATAA 2406 0.4231 MEIHPPEILQARFSDSVLGGVPFGGASTTSQMPVSEGALTEPSSSNSGSLDDRSLVPYVPNQVGISASLSSEAQKERINASLSSNISVSHPNLGSKTLDECSPSTSVEISAPLVPQLTTTHGSSLPMATSAENNYYLPFCDSGREDRDDVSEPIRSVNDLSYYPALSSPKRWPSCSSSSQLPPKVTWNSELTSDEILVPSEDTGTPLNNGFNVSGIIPFTVLFVSQGAGLENLGNTCFLNVILQCLTHIVPLIRGLCTCSHTAPCESGIDGFCVLCVLRDHIELSLKSSGRIISPWKLVDNLNSPMDEYFQDAVIHDPLLDLSSFFTRYQQEDAHEFLQCFLDKLERCFLDLKRNSKSGDQVDNLVEKIFGGRLISKLQCCNCGHCSDTYEPLIDFSLEIENVDSLPSALASFTKVEKIDATFTCDSCKEEVSMEKRLILDQTPSVAAFHFKRFKTDGIYVEKIDNHVDFPLELDLQPYTNCNESNNEALKYDLYAIVVHVGVSSTSGHYFCFVRTAPDMWYRLDDSKVTRVAGGFVLSQEAYILLYARQGTPWLSSIMDASSLCLVPSVFNTSPKSVLDNVDGLYRPNPNVADFASGGANEPRGVSQKMPGYSGGGFNEILNDYMDSYLEDGQVQFELNPTTVNSNGSKGETTHVQVRCNERKGSLPSLDENGHQEAVDIRENDVFHSLTPPSSPCPDSNSADITCRIPRDHLKMENHERCKRPLNKTLDDSERKEATRYLNKNVHGSRRSKLLGAMAGPSHESHSIKKRKKLGSQLCKKSIPPGDRKKSNHRSVMCASR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0957 801 MobiDBLite consensus disorder prediction 24 55 - -
Lele52g0957 801 MobiDBLite consensus disorder prediction 757 801 - -
Lele52g0957 801 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 229 244 IPR018200 GO:0004843|GO:0006511
Lele52g0957 801 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 492 510 IPR018200 GO:0004843|GO:0006511
Lele52g0957 801 Gene3D Cysteine proteinases 225 552 - -
Lele52g0957 801 FunFam Ubiquitin carboxyl-terminal hydrolase 20 224 553 - -
Lele52g0957 801 MobiDBLite consensus disorder prediction 24 52 - -
Lele52g0957 801 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 110 550 - -
Lele52g0957 801 Pfam Ubiquitin carboxyl-terminal hydrolase 229 547 IPR001394 GO:0004843|GO:0016579
Lele52g0957 801 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 228 550 IPR028889 -
Lele52g0957 801 SUPERFAMILY Cysteine proteinases 228 549 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0957 Lele-ChrLele52 6239755 6243392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0957 229 549 Miscellaneous Gene Families AT4G31670 34.954 6.33e-47 175
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0957 52 6239755 6243392 Lele52g0957 52 6239755 6243392 ECH
Lele49g0922 49 5767893 5771472 Lele52g0957 52 6239755 6243392 hybridization
Lele50g0979 50 6195152 6199112 Lele52g0957 52 6239755 6243392 hybridization