LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0922	ATGGAGTTCCATCCTCCTGAAATCCTCCAAGCTAGGTTTTCAGATTCTGTTCTTGGCGGAGTATCCTTTTGCGGCGCTTCAACGACTTCACAAATGCCGGTTTCAGAGGGAGCTCTAACTGAGTCTTCACCGTCTTCGAATTCTGGGAGTCTTGATGACCGTTCTTTGGTTCCATATGTACCAAGTCAGGTGGGGGTTTCGGCTTCTTTATCCAGTGAGGCCCAAGAGGAGCGGATCAATGCGTCTTTATCATCCAATATAAGTGTATCTCATCCATATTCAGGTCCCAAAACCCTAGACGAGTGTTCACCTTCCGCATCAGTAGAAATCTCGGCGCCTTTGGTGCCTCAGTCATCAACTCCTGACGAGTCGTCACTGCCCATCGCAACGTCTGCCGGGAATAATTATTACATCCCACTCTGTGATTCTGGTAGGGAAAATCGAGATGATGTTCCAGAGCCAATTCGATCGGTAAACGATTTATCATATTATCCGGTTTTATCATCTCCCAAGCAGTGGCCTCCGTGGCCCTCATCTTCGCAGCTTCCCCCTAAGGGAAATTGGAATTCCAAGCTTACTTCCGATGAAATCTTGGTCCCATCTAAAGATACTGGCACGCCTCTGAACAATGGGTTTAATGTATCCGGAATTATACCTTTCACGGTGGGTGCTGGCCTTGAAAATCTTGGCAATACATGCTTTTTCAATGTTATCTTGCAATGCCTTACACATACTGTGCCACTAATTCAGGGTCTTTGTACTTGCAGTCATACTGCACCTCGTGAAAGTAGTATTGAGGGATTCTGTGTTCTTTGTGTTCTTCGTGATCACATTGAACTTTCGTTGAAGTCTTCTGGAAGAATTATCTCACCTTGGAAACTTGTTGACAATTTGAATTATTTTTCTTCTTTTTTTACAAGATACCAGCAGGAGGATGCCCATGAATTCCTGCAGTGCTTCCTAGATAAACTAGAACGATGCTTTCTAGATTTAAAGAGAAATAGCAAGAGCTGTGAACAAGTTGACAATCTAGTGGAGAAAATATTTGGAGGTTGCCTTATCAGCAAACTGCAATGTTGTAACTGTGGCCACTGTTCAGACACTTATGAGCCTCTCATTGACTTTAGCTTGGAGATAGAAAATGTGGACAGCCTTCCAAGTGCTCTAGCGTCTTTCACTAAGGTAGAAAAGATAGATGCTACATTTACATGTGATAGCTGCAAGGAAGAAGTGTCCATGGAGAAGAGGCTTATTTTGGATCAGACACCTTCTGTTGCAGCATTTCATTTAAAGAGATTTAAGACCGATGGGATATATGTTGAAAAGATTGATAATCATGTGGATTTTCCTCTAGAATTGGACTTGCAGCCTTATACTAATTGTAATGAGAGCAATAATGAAGCACTGAAGTATGACCTGTATGCCATTGTTGTGCATGTTGGGTTTTCATCTACTTCTGGGCATTACTTTTGCTTTGTCCGCACTGCACCTGACATGTGGTATAGGTTGGATGACTCCAAGGTTACTAGAGTTGCAGGAGATTTTGTGCTGTCTCAGGAAGCATACATATTATTCTATGCTCGACAGGGCACACCATGGCTTTCTACTATAATGGACGCTTCAATCTCATGCTTGGCCCCCAGTGTTTTTAATACTTCTCCAAAGTCAGTTTTAGACAACGTTGATGGCTGGTATCGCCCTAATCCTAATGAGACACATTTTGCAAGTGGTGTTACAAATGAACCCCAAGGAATTTCCCAGCAGATGCTTGGTTATTCTGGTGGAGGACTGAATGAAATCCTCAATTATTATATGGATACTTATCTTGAAGCTGGACAAGTTCAGTTTGAGTTAAATCCAACTACTGTTAATTCTAATGGCTCTAAAGAAGAAACCACCCATGTCCAAGTACCATGTAATGAGAGAAATGGTTCGCTGCCCTCACTTGACGAAAAAGGTCATCAGGAGGCTGTTGATATTAGAGAGAATGATGTTTTCCATCCTTTAACCCCACCCAGCTCCCCAGGCCCAGATTCTAATTCTCCAGATATTACTTGTCGCATCCCCCGGGATCATTTGGAGATGGAGAATCCTGAGAGGTGTAAAAGACCATTAAATAAGACTCTGGATGATTCTGAGAGGAAAGCAGCTGTGAGATATCTTAGCAAGAATGTCCATAGTTCGAGGAGATCAAAACTCCTGGGTGCCATGGCTGGTCCCTCCCATGAAAGTCATTCTATCAAAAAGAGGAAGAAATTGGGTTCTCAACTATGTAAGAAATCCATACCTCCTGGGGACCGTAAGAAATCAAATCATGGTTCTGTCATGTGTGCTTCAAGATAA	2343	0.4277	MEFHPPEILQARFSDSVLGGVSFCGASTTSQMPVSEGALTESSPSSNSGSLDDRSLVPYVPSQVGVSASLSSEAQEERINASLSSNISVSHPYSGPKTLDECSPSASVEISAPLVPQSSTPDESSLPIATSAGNNYYIPLCDSGRENRDDVPEPIRSVNDLSYYPVLSSPKQWPPWPSSSQLPPKGNWNSKLTSDEILVPSKDTGTPLNNGFNVSGIIPFTVGAGLENLGNTCFFNVILQCLTHTVPLIQGLCTCSHTAPRESSIEGFCVLCVLRDHIELSLKSSGRIISPWKLVDNLNYFSSFFTRYQQEDAHEFLQCFLDKLERCFLDLKRNSKSCEQVDNLVEKIFGGCLISKLQCCNCGHCSDTYEPLIDFSLEIENVDSLPSALASFTKVEKIDATFTCDSCKEEVSMEKRLILDQTPSVAAFHLKRFKTDGIYVEKIDNHVDFPLELDLQPYTNCNESNNEALKYDLYAIVVHVGFSSTSGHYFCFVRTAPDMWYRLDDSKVTRVAGDFVLSQEAYILFYARQGTPWLSTIMDASISCLAPSVFNTSPKSVLDNVDGWYRPNPNETHFASGVTNEPQGISQQMLGYSGGGLNEILNYYMDTYLEAGQVQFELNPTTVNSNGSKEETTHVQVPCNERNGSLPSLDEKGHQEAVDIRENDVFHPLTPPSSPGPDSNSPDITCRIPRDHLEMENPERCKRPLNKTLDDSERKAAVRYLSKNVHSSRRSKLLGAMAGPSHESHSIKKRKKLGSQLCKKSIPPGDRKKSNHGSVMCASR	780

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0922	780	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 2.	471	489	IPR018200	GO:0004843\|GO:0006511
	Lele49g0922	780	FunFam	Ubiquitin carboxyl-terminal hydrolase 20	220	532	-	-
	Lele49g0922	780	MobiDBLite	consensus disorder prediction	735	780	-	-
	Lele49g0922	780	MobiDBLite	consensus disorder prediction	29	56	-	-
	Lele49g0922	780	SUPERFAMILY	Cysteine proteinases	223	528	IPR038765	-
	Lele49g0922	780	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	225	240	IPR018200	GO:0004843\|GO:0006511
	Lele49g0922	780	Gene3D	Cysteine proteinases	222	533	-	-
	Lele49g0922	780	MobiDBLite	consensus disorder prediction	29	53	-	-
	Lele49g0922	780	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	224	529	IPR028889	-
	Lele49g0922	780	MobiDBLite	consensus disorder prediction	620	643	-	-
	Lele49g0922	780	Pfam	Ubiquitin carboxyl-terminal hydrolase	225	526	IPR001394	GO:0004843\|GO:0016579
	Lele49g0922	780	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	89	529	-	-
	Lele49g0922	780	MobiDBLite	consensus disorder prediction	620	653	-	-
	Lele49g0922	780	MobiDBLite	consensus disorder prediction	86	105	-	-
	Lele49g0922	780	MobiDBLite	consensus disorder prediction	665	695	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0922	Lele-ChrLele49	5767893	5771472	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0922	185	559	Miscellaneous Gene Families	AT4G31670	34.115	1.79e-51	188

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0922	49	5767893	5771472	Lele49g0922	49	5767893	5771472	ECH
	Lele49g0922	49	5767893	5771472	Lele51g0939	51	5864135	5867681	hybridization
	Lele49g0922	49	5767893	5771472	Lele52g0957	52	6239755	6243392	hybridization