Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0979 ATGCCGGTTTCGGAGGGTGCTGTAACTGAGCCTTCTTCTTCGAATTATTGGAGTCTCGATGACCGTTCTTTGGTTCCATATGTACCAAATCAGGTGGGGGTTTCGGCGTCTTTATCCAGTGAAGCCCAAAAAGAGCGCATCAATGCGTCTTTATCATCCAATATAAGTGTATCTCATCCCAATTTAGGTTCCAAAACTCTAGATGAGTGTTCACCTTCTGCATCAGTAGAAATCTCAGCGCCTTTGGTGCCTCAGTTAACAACTCCTCACGGGTCATCACTGCCCATGGCAGCGTCTGCCGAGAATAATTATTACCTGCCATTCTGTGATTCTGGTAGGGAAGATCGAGATGATGGTCCAGAGCCAATTCGATCGGTAAACGATTTATCATATTATCCGGCTTTATCATCTCCCAAGCGGTGGCCTTCGTCCCCCTCATCTTCACAGCTTCCCCCTAAAGTAACTTGGAATTCCGAGCTTACTTCCGATGAAATCTTGGTCCCATCTGAAGATACTGGCACGCCTTTGAACAATGGGTTTAATGTTTCCGGAATTATACCCTTCACGGTGGGTGCTGGCCTTGAAAATCTTGGCAATACATGCTTTCTCAATGTTATCTTGCAGTGCCTTACACATATTGTGCCACTAATTCGGGGTCTTTGTACTTGCAGTCATACTGCACCTTGTGAAAGTGGTATTGATGGATTCTGTGTTATTTGTGTTCTTCGTGATCACATTGAACTTTCGTTGAAGTCTTCTGGAAGAATTATCTCACCTTGGAAACTTGTTGACAATTTGAGTTCTCCAATGGATGAGTACTTTCAAGATGCTGTTATCCATGACTCCCTATTAGATTTGTCTTCTTTTTTTACAAGATACCAGCAGGAGGATGCCCATGAATTCCTGCAGTGCTTCTTAGATAAACTGGAAAGATGCTTTCTAGGTTTAAAGAGAAATAGCAAGAGTGGTGAACAAGTTGACAATCTAGTGGAGAAAATATTTGGAGGTCGCCTCATCAGCAAACTTCGATGTTGTAACTGTGGCCACTGTTCAGACACTTATGAGCCTCTCATTGACTTTAGCTTGGAGATAGAAAATGTGGACAGCCTTCCAAGTGCTTTAGCATCTTTCACTAAGACACCTTCAGTTGCAGCATTTCATTTTAAGAGATTTAAGACAGATGGGATATATGTTGAAAAGATTGATAATCATGTGGATTTCCCTCTAGAATTGGACTTGCAGCCTTATACTAATTGTAATGAGAGCAATAATGAAGCACTGAAATATGACCTGTATGCCATTGTGGTGCATGTTGGGTTTTCATCTACGTCTGGGCATTACTTTTGCTTTGTCCGCACTGCCCCTGACATGTGGTATAGGCTGGATGACTCCAAGGTTACCAGAGTTGCTGGAGGTTTTGTGCTGTCTCAGGAAGCATACATATTACTCTATGCTCGACAGGGCACACCATGGCTATCTACAATAAGGGATGCTTCAAGCCCATGCTTGTTCCCCAGCGTTTTTAGTTCTTCACCCAAGTCAGTTTTAGACAATGTTGATGGCTTGTATCGCCCTAATCCTAATGTGGCAGATTTTGCAAGTGGTGGTGCAAATGAACCCCGAGGAGTTTCCCAGCAGATGCCTGGTTATTCTGGTGGAGGATTTAATGAAATCCTCAATGATTATATGGATTCTTATCTTGAAGATGGTCAAGTTCAGTTTGAGTTAAATCCAACTACTGTTAATTCTAATGGCTCTAAAGGAGAAACCGCCCATGTCCAAGTACCATGCAATGAGAGAAAAGGTTCCCTGCCCTCGCTTGACGAAAATGGTCATCGGGATGCTGTTGATATTAGAGAGAATGATGTTTTCCATACTTTAACCCCACCCAGCTCCCCAGGTCCAGATTCTAATTCTCCAGATATTACTTGCCGCATTCCACGGGATCATTTGAAGATGGAGAATCATGATAGGTGTAAAAGACCATTAAATAAGACCTTGGATGATTCTGAGAGGAAAGAAGCTACGAGATATCTTAACAAGAATGTGCATGGTTCAAGGAGATCAAAACTCCTGGATGCCATGGCTGGGCCCTCCCAGGAAAGTCATTCTATCAAAAAGAGGAAGAAATTGGGTTCTCAACTATGTAAGAAATCCATACCTCCTGGTGACCGTAAGAAATCAAATCATAGATCTGTCATGTTGGGGGGATTCAACAAAGATGGGGGGATCTGTGCTCTGAATGCTAGTGGCTTAGTGTCGTATCCTCTACTTCTAGAAGATAGTAGTGCTAATGTTTATGCGAGTGTTCAGGATCTTGAAGCACGTGGTTTCATTAATAAATAG 2346 0.4275 MPVSEGAVTEPSSSNYWSLDDRSLVPYVPNQVGVSASLSSEAQKERINASLSSNISVSHPNLGSKTLDECSPSASVEISAPLVPQLTTPHGSSLPMAASAENNYYLPFCDSGREDRDDGPEPIRSVNDLSYYPALSSPKRWPSSPSSSQLPPKVTWNSELTSDEILVPSEDTGTPLNNGFNVSGIIPFTVGAGLENLGNTCFLNVILQCLTHIVPLIRGLCTCSHTAPCESGIDGFCVICVLRDHIELSLKSSGRIISPWKLVDNLSSPMDEYFQDAVIHDSLLDLSSFFTRYQQEDAHEFLQCFLDKLERCFLGLKRNSKSGEQVDNLVEKIFGGRLISKLRCCNCGHCSDTYEPLIDFSLEIENVDSLPSALASFTKTPSVAAFHFKRFKTDGIYVEKIDNHVDFPLELDLQPYTNCNESNNEALKYDLYAIVVHVGFSSTSGHYFCFVRTAPDMWYRLDDSKVTRVAGGFVLSQEAYILLYARQGTPWLSTIRDASSPCLFPSVFSSSPKSVLDNVDGLYRPNPNVADFASGGANEPRGVSQQMPGYSGGGFNEILNDYMDSYLEDGQVQFELNPTTVNSNGSKGETAHVQVPCNERKGSLPSLDENGHRDAVDIRENDVFHTLTPPSSPGPDSNSPDITCRIPRDHLKMENHDRCKRPLNKTLDDSERKEATRYLNKNVHGSRRSKLLDAMAGPSQESHSIKKRKKLGSQLCKKSIPPGDRKKSNHRSVMLGGFNKDGGICALNASGLVSYPLLLEDSSANVYASVQDLEARGFINK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0979 781 SUPERFAMILY Cysteine proteinases 191 486 IPR038765 -
Lele50g0979 781 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 193 208 IPR018200 GO:0004843|GO:0006511
Lele50g0979 781 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 192 487 IPR028889 -
Lele50g0979 781 Pfam Ubiquitin carboxyl-terminal hydrolase 193 484 IPR001394 GO:0004843|GO:0016579
Lele50g0979 781 Gene3D Cysteine proteinases 377 491 - -
Lele50g0979 781 MobiDBLite consensus disorder prediction 685 731 - -
Lele50g0979 781 MobiDBLite consensus disorder prediction 624 645 - -
Lele50g0979 781 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 429 447 IPR018200 GO:0004843|GO:0006511
Lele50g0979 781 MobiDBLite consensus disorder prediction 655 674 - -
Lele50g0979 781 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 86 487 - -
Lele50g0979 781 Gene3D Cysteine proteinases 189 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0979 Lele-ChrLele50 6195152 6199112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0979 157 518 Miscellaneous Gene Families AT4G31670 29.975 3.68e-37 146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0979 50 6195152 6199112 Lele50g0979 50 6195152 6199112 ECH
Lele50g0979 50 6195152 6199112 Lele51g0939 51 5864135 5867681 hybridization
Lele50g0979 50 6195152 6199112 Lele52g0957 52 6239755 6243392 hybridization