Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0926 ATGATAATCCGAGACGTGGTTCAAATAAAAACTGTTAAAGTCAGTAATCTTTCCCTGGGAGCAACTGAACAAGACATTAAGGAGTTTTTTTCTTTCTCTGGTGATATTGAATATGTTGAACTGGGGAGTCATGATGAACGATCTCAAATTGCTTATGTCACCTTCAAGGATTCACAAGGAGCTGAGACTGCTGCACTACTATCGGGAGCAACGATAGTTGATTCTTCGGTTACAATAACTTTGGATCCAGATTACCAGCTTCCACGAGCTGCTTTGACATCACCTGTAACTGAAAGTAAGGCTCCTGTTGATGCTGAATCTGCTTTTAGAAAGGCAGAGGATGTGGTCACCGGCATGCTGGCGAGGGGCTTTGTCTTGGGGAAAGATGCTGTGAGCAAAGCAAAGACATTCGATGAGAAGCATCAGTTATCATCAACTGCCTCAACAAAAGTTGCATCTTTTGATCAGAAAATTGGTTTCAGTGAGAAAATAACTGCTGGTGCTTCAGCCGTGGGCGATCGAGTTCGAGAAGTGGATCAAAAGTTTCAGGTTTCAGAAAAAACCAAAACGGCATTTGCAGCCGCAGAACAGAAAGTCAATGAAGCGGGTTCTGCTATCATGAAAAATCGCTATATACTCACGGGGACTTCATGGGTCACAGGTGCTTTCAGTAAGGTTGTTAAGGCAGCTGAGGATGTGGGACAGAAGACAAAGGAGAAAGTGAACAATACAGAAGAAGAACGGAAACAAAAGGATCAGCATGCCCAGGTCCTCTCTGAATCACCAAAAGCAGCTCCAACAACAGGTGAACAGAACCAACCTAATCCTTCTTCTCCTAAGGGTTTGATCCTTTAA 855 0.4351 MIIRDVVQIKTVKVSNLSLGATEQDIKEFFSFSGDIEYVELGSHDERSQIAYVTFKDSQGAETAALLSGATIVDSSVTITLDPDYQLPRAALTSPVTESKAPVDAESAFRKAEDVVTGMLARGFVLGKDAVSKAKTFDEKHQLSSTASTKVASFDQKIGFSEKITAGASAVGDRVREVDQKFQVSEKTKTAFAAAEQKVNEAGSAIMKNRYILTGTSWVTGAFSKVVKAAEDVGQKTKEKVNNTEEERKQKDQHAQVLSESPKAAPTTGEQNQPNPSSPKGLIL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0926 284 FunFam RNA recognition motif-containing protein 6 80 - -
Lele52g0926 284 SUPERFAMILY RNA-binding domain, RBD 8 82 IPR035979 GO:0003676
Lele52g0926 284 Gene3D - 7 80 IPR012677 -
Lele52g0926 284 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 8 246 - -
Lele52g0926 284 Coils Coil 227 247 - -
Lele52g0926 284 MobiDBLite consensus disorder prediction 233 284 - -
Lele52g0926 284 CDD RRM_Vip1_like 12 80 IPR034360 -
Lele52g0926 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 72 IPR000504 GO:0003723
Lele52g0926 284 SMART rrm1_1 11 80 IPR000504 GO:0003723
Lele52g0926 284 MobiDBLite consensus disorder prediction 233 256 - -
Lele52g0926 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 84 IPR000504 GO:0003723
Lele52g0926 284 MobiDBLite consensus disorder prediction 260 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0926 Lele-ChrLele52 6034720 6037680 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0926 52 6034720 6037680 Lele52g0926 52 6034720 6037680 ECH
Lele49g0898 49 5607959 5611755 Lele52g0926 52 6034720 6037680 hybridization
Lele50g0946 50 5987665 5991162 Lele52g0926 52 6034720 6037680 hybridization