Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0946 ATGACCAGGAAAAAAAAACAAAACTCCGAAATAAAAATCAACCGCCTGCAAAATCTTCTCCGCGGACTTGGCTTCTTCAAAGACCTTAGCTTCTTCAAAGACCTTGCCACAGAGATAAGCCCTCCGATAGCTGAGTTACTTGGTGGTTTCTCTTCAAAGAAGATTTCTATCTCCAATCGTTTCGCGATGTCGCAAATAAAAACTGTTAAAGTCAGTAATCTTTCCCTGGGAGCAACTGAACAAGACATTAAGGAGTTTTTTTCTTTCTCTGGTGATATTGAATATGTTGAAATGGGGAGTCATGATGAGCGATCTCAAATTGCTTATGTCACCTTCAAGGATTCACAAGGAGCTGAGACTGCTGCACTACTATCGGGAGCAACGATAGTTGATTCTTCAGTTACAATAACTTTGGATCAAGATTACCAGCTTCCACCAGCTGCTTTGACATCACCTGTAACTGAAAGTAAGACTCCTGGTGGTGCTGAATCTGCTTTTAGAAAGGCAGAGGATGTGGTCACCGGCATGCTGGCGAGGGGCTTTGTCTTGGGGAAAGATGCTGTCAACAAAGCAAAGACATTCGATGAGAAGCATCAGTTATCATCAACTGCCTCAACAAAAGTTGCATCTTTTGATCAGAAAATTGGTTTCAGTGAGAAAATAACTGCTGGTGCTTCAGCCGTGGGTGGTCGAGTTCGAGAAGTGGATCAAAAGTTTCAGGTTTCAGAAAAAACCAAAACGGCATTTGCAGCCGCAGAACAGAAAGTCAATGAAGCGGGTTCTGCTATCATGAAAAATCGCTATATACTCACGGGGACTTCATGGGTAACAGGTGCTTTCAGTAAGGTTGTTAAGGCAGCTGAGGATGTGGGACAGAAGACAAAGGAGAAAGTGAACAATGCAGAAGAACGGAAACAAGAGGATCAGCATGCCCAGGTCCTCTCTGAATCACCAAAAGCAGCGCCAACAACAGGTGAACAGAACCCACCTAAGCCTTCTTCTCCTAAGGGTTTGATCCTTTAA 1023 0.436 MTRKKKQNSEIKINRLQNLLRGLGFFKDLSFFKDLATEISPPIAELLGGFSSKKISISNRFAMSQIKTVKVSNLSLGATEQDIKEFFSFSGDIEYVEMGSHDERSQIAYVTFKDSQGAETAALLSGATIVDSSVTITLDQDYQLPPAALTSPVTESKTPGGAESAFRKAEDVVTGMLARGFVLGKDAVNKAKTFDEKHQLSSTASTKVASFDQKIGFSEKITAGASAVGGRVREVDQKFQVSEKTKTAFAAAEQKVNEAGSAIMKNRYILTGTSWVTGAFSKVVKAAEDVGQKTKEKVNNAEERKQEDQHAQVLSESPKAAPTTGEQNPPKPSSPKGLIL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0946 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 141 IPR000504 GO:0003723
Lele50g0946 340 SMART rrm1_1 68 137 IPR000504 GO:0003723
Lele50g0946 340 MobiDBLite consensus disorder prediction 316 331 - -
Lele50g0946 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 129 IPR000504 GO:0003723
Lele50g0946 340 CDD RRM_Vip1_like 69 137 IPR034360 -
Lele50g0946 340 MobiDBLite consensus disorder prediction 290 312 - -
Lele50g0946 340 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 59 306 - -
Lele50g0946 340 FunFam RNA recognition motif-containing protein 63 137 - -
Lele50g0946 340 Coils Coil 284 304 - -
Lele50g0946 340 Gene3D - 63 137 IPR012677 -
Lele50g0946 340 MobiDBLite consensus disorder prediction 290 340 - -
Lele50g0946 340 SUPERFAMILY RNA-binding domain, RBD 62 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0946 Lele-ChrLele50 5987665 5991162 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0946 50 5987665 5991162 Lele50g0946 50 5987665 5991162 ECH
Lele50g0946 50 5987665 5991162 Lele51g0915 51 5687222 5691034 hybridization
Lele50g0946 50 5987665 5991162 Lele52g0926 52 6034720 6037680 hybridization