Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0898 ATGTCGCAAATAAAAACTGTTAGAGTCAGTAATCTTTCCCTGGGAGCAACTGAACAAGACATTAAGGAGTTTTTTTCTTTCTCTGGTGATATTGAATATGTTGAACTGAGGAGTCATGATGAACGATCTCAAATTGCTTATGTCACCTTCAAGGATTCTCAAGGAGCTGAGACTGCTGCACTACTATCGGGAGCAACGATAGTCGATTCATCAGTTACAATAACTATGGATCCAGATTACCAGCTTCCACCAGCTGCCTTGACATCACCTGTAACCGAAAGTAAGACTCCTGGTGGTGCTGAATCTGCTTTGAGAAAGGCAGAGGATGTGGTCACCGGCATGCTTGCCAGGGGCTTTGTGTTGGGGAAAGATGCTGTCAACAAAGCTAAGACATTTGATGAGAAGCATCAGTTATCATCAACCGCCTCGGCAAAAGTTGCATCTTTTGATCAGAAAATTGGTTTCAGTGAGAAAATAACTGCTGGTGCTTCAGCCGTGGGTGATCGAGTTCGAGAAGTGGATCAAAAGTTTCAGGTTTCGGAGAAAACCAAAACGGCCTTTGCAGCCGCAGAACAGAAAGTCAATGAAGCGGGTTCTGCTATCATGAAAAATCGCTACATACTCACTGGGGCTTCATGGGTAACAGGTGCTTTCAGTAAGGTTGTTAAGGCAGCTGAGGATGTAGGACAGAAGACAAAAGAGAAAGTGCACAGTGAAGAGGAACGGAAGCAAAAGGATCAGCATGGTCAGGTCATCTCTGAGTCACCAAGAACAGGTGAACAGAACCCATCTAAGCCTTCTTCTCCCAAGGGCTTGATCCTTTAA 825 0.4473 MSQIKTVRVSNLSLGATEQDIKEFFSFSGDIEYVELRSHDERSQIAYVTFKDSQGAETAALLSGATIVDSSVTITMDPDYQLPPAALTSPVTESKTPGGAESALRKAEDVVTGMLARGFVLGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIGFSEKITAGASAVGDRVREVDQKFQVSEKTKTAFAAAEQKVNEAGSAIMKNRYILTGASWVTGAFSKVVKAAEDVGQKTKEKVHSEEERKQKDQHGQVISESPRTGEQNPSKPSSPKGLIL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0898 274 CDD RRM_Vip1_like 7 75 IPR034360 -
Lele49g0898 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 79 IPR000504 GO:0003723
Lele49g0898 274 SMART rrm1_1 6 75 IPR000504 GO:0003723
Lele49g0898 274 MobiDBLite consensus disorder prediction 228 250 - -
Lele49g0898 274 SUPERFAMILY RNA-binding domain, RBD 5 83 IPR035979 GO:0003676
Lele49g0898 274 FunFam RNA recognition motif-containing protein 1 75 - -
Lele49g0898 274 Gene3D - 2 75 IPR012677 -
Lele49g0898 274 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 244 - -
Lele49g0898 274 MobiDBLite consensus disorder prediction 251 268 - -
Lele49g0898 274 MobiDBLite consensus disorder prediction 228 274 - -
Lele49g0898 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 67 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0898 Lele-ChrLele49 5607959 5611755 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0898 49 5607959 5611755 Lele49g0898 49 5607959 5611755 ECH
Lele49g0898 49 5607959 5611755 Lele51g0915 51 5687222 5691034 hybridization
Lele49g0898 49 5607959 5611755 Lele52g0926 52 6034720 6037680 hybridization