Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0795 ATGGCGATTGCTTCTCACTCGACTCCGAGCTTCTCACCTTCTTTCTGCTCCACTCGGACTCAATTCACCGGTCTCTCGCGCTTCCCCTCTGTCACCTTGTCTCACTCTCGCTCAAACCAAATTCGCTCTTCAACTCGTCGACTTGTAGTATCGTCTCGGCTCAATTCGTCTGAATTCTCCGGTGCTGATGGATTTGTCTCGCCGGACAAGGAAGGTTTCCCCTACGAACTCCAGCACGATTTTTCACCTCAACGTCAGAGGAAGGGGTCGCCGGTATACGTCACGCTTCCGTTAGATGCCGTGGGCCCTGAGGGGCGAGTATTGAGGGTTAAAGCTATGATGGTGTCGTTCCGGTCGCTTGCATTGGCTGGAGTAGAAGGCGTGGTTTTGGAGATTTGGTGGGGTTTAGTTGAGAGGAATGAGCCTATGGTTTATGATTGGCGAGGGTATCGGCAACTCATCAAGATGGCTGGGACGTGGGGCCTGAAGGTTCGAGTTGTCCTTGCGTTTCATCAGTGCGGCAGGGACTCTACTGATCCTAATTGGATACCTCTTCCTCTATGGGTGCTTGATGAGATAAAAAAAGATCCAGATTTACTATATTCAGATACGTTTGGGACAAGAAGTACTGAATACATCTCACTTGGATGTGATACACTTCCTGTGCTCTGTGGACGATCTCCAATTCAGGCATATGCTGATTTTATGAGGAACTTCAGGAACACCTTCAGGCCTTGCTTTGGCATTATCATAACAGGAGTACAGATTGGTATGGGTCCTGATGGTGAATTAAGATATCCTTCATGCCCTTCCCAGATGATCCATGGTAGGCGCACTGAATTTCAAGAATTTCAGTGCTATGATAAGTATATGATTGCATCATTAAAAGCCTGTGCAAGCGATATTGGAATGCCTGAATGGGGACAAAGTGCTCCGCCACAGAGCACTGGAATTTTCAAGCTGAATTTGTTTTCTACTGTCGACTATAGCCCTTGGACCTGGGGACAGGGTAGATTTTTCCTCAAGTGGTACTCGGGGATGCTGCTACTGCATGGAGAAAGAATTTGTAGGGAAGCTGAAGCTATATTTAGGGGTACAGAAGTCGACATATCAGCAAAAGTGGCTGCTTTTCACAGGCACTATCAGACTTATTCCCAGCCATCAGAGTTAACCGCAGGATACTACAATACTTTCGATAGGAATGGATACTTACCCATTGCTCGCATGTTTAGTAGGTATGGATTTGGCTTATGCTGCTCATGTTTCGAAATGAAAGATGCAGTAGAAAATAAGATAAACCCAGTTAGCAGCCCGGAAGGTTTGCTTAGACAGCTGCTGTTTGCGGCTAGGCGCTATGACATACCCCTGGAAGGTCAAAGTATTTCATCCGATTTCAATGATATATCATTCAAGCAGGTGCTGAAGATGTCAAAGTTTTACATAGATGGGGCTGAAAAGCGTCCCTTCTCTTTCAACTTCGTGAGAATGGGCAAAAATATGTTTCAGTCTCCTTTTTGGGATCGTTTTACTCGTTTTGTGAGGCATATGTCAGATGGGCATAATAATTTTCGAGCCAGATTAAATTCTGTCGCTGACGTGCGTCCCAAGTCCTTGACTAGGGCCGCGATTCGAGGTTCAGAATCTTCTTTTTGCTCTTTGTTGACCTGTATCCAGGTGAAAGTGAACTGTGAAACCTCCATCATACTTTGA 1710 0.4602 MAIASHSTPSFSPSFCSTRTQFTGLSRFPSVTLSHSRSNQIRSSTRRLVVSSRLNSSEFSGADGFVSPDKEGFPYELQHDFSPQRQRKGSPVYVTLPLDAVGPEGRVLRVKAMMVSFRSLALAGVEGVVLEIWWGLVERNEPMVYDWRGYRQLIKMAGTWGLKVRVVLAFHQCGRDSTDPNWIPLPLWVLDEIKKDPDLLYSDTFGTRSTEYISLGCDTLPVLCGRSPIQAYADFMRNFRNTFRPCFGIIITGVQIGMGPDGELRYPSCPSQMIHGRRTEFQEFQCYDKYMIASLKACASDIGMPEWGQSAPPQSTGIFKLNLFSTVDYSPWTWGQGRFFLKWYSGMLLLHGERICREAEAIFRGTEVDISAKVAAFHRHYQTYSQPSELTAGYYNTFDRNGYLPIARMFSRYGFGLCCSCFEMKDAVENKINPVSSPEGLLRQLLFAARRYDIPLEGQSISSDFNDISFKQVLKMSKFYIDGAEKRPFSFNFVRMGKNMFQSPFWDRFTRFVRHMSDGHNNFRARLNSVADVRPKSLTRAAIRGSESSFCSLLTCIQVKVNCETSIIL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0795 569 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 36 521 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 SUPERFAMILY (Trans)glycosidases 88 521 IPR017853 -
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 385 396 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 167 188 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 145 163 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 259 281 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 332 351 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 124 138 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 441 463 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 403 426 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 368 384 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 Pfam Glycosyl hydrolase family 14 93 512 IPR001554 GO:0000272|GO:0016161
Lele52g0795 569 Gene3D Glycosidases 81 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0795 Lele-ChrLele52 5040161 5046397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0795 91 526 Glycoside Hydrolase AT3G23920 44.989 1.03e-134 402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0795 52 5040161 5046397 Lele52g0795 52 5040161 5046397 ECH
Lele49g0770 49 4671487 4674364 Lele52g0795 52 5040161 5046397 hybridization
Lele50g0811 50 4988503 4991371 Lele52g0795 52 5040161 5046397 hybridization