Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0811 ATGGCGATTGCTTCTCACTCGACTCCGAGCTTATCACCTTCTTTCTGCTCCACTCGGACTCAATTCACTGGTCTCTCGCGCTTCCCCTCTGTCACCTTGTTTCAGTCTCGCTCAAACCAAACTCGCTCTTCAACTCGTCGACTTGTAGTATCGTCTCGGCTCAATTCGTCTAAATTCTCCGGTGCTGATGGATTTGTCTCGCCGGACAAGGAAGATTTCCCCTACGAACTCCAGCACGATTTCCCCCCTCAACGTCAGAGGAAGGGATCTCCGGTATACGTCACGCTTCCGTTAGATGCCGTGGGCCCGGAGGGGCGAGTCTTGAGGGTTAAAGCTATGATGGTCTCGTTCCGGTCGCTTGCATTGGCTGGAATAGAAGGCGTGGTTTTGGAGATTTGGTGGGGTTTAGTTGAGAGGAATGAGCCTATGGTTTATGATTGGCGAGGGTATCGGCAACTCATCAAGATGGCTGGGACGTGGGGCCTGAAGGTTCGAGTTGTCTTTGCGTTTCATCAGTGCGGCAGGGACTCTACTGATCCTAATTGGATACCCCTTCCTCTATGGGTGCTTGATGAGATTAAAAAAGATCCAGATTTACTATATTCAGATACGTTTGGGACAAGAAGTACTGAATACATCTCACTCGGATGTGATACACTTCCAGTGCTCTGTGGACGATCTCCAATTCAGGCATATGCTGATTTTATGAGGAACTTCAGGAACACCTTCATGCCTTGCTTTGGCATTATCATAACAGGAATACAGATTGGTATGGGTCCTGATGGTGAATTAAGATATCCTTCATGCCCTTCCCAGATGATCCATGGTAGGCGCACTGAATTTCAAGAATTTCAGTGCTATGATAAGTATATGATTGCATCACTAAATGCCTGTGCAAGCGATATTGGAATGCCTGAATGGGGACAAGGTGCTCCTCCACACAGCACTGGAATTTTCAAGCTCAATTTGTTTTCTACTGTCAAGTATAGCCCTTGGACCTGGGGACAGGGTAGATTTTTCCTCAAGTGGTACTCGGGGATGCTGCTACTGCATGGAGAAAGGATTTGTAGGGAAGCTGAAGCTATATTTAGGGGTACAGAAGTCGACATATCAGCAAAAGTGGCTGCTTTTCACAGGCACTATCAGACTTATTCCCATCCATCAGAGTTAACCGCAGGATACTACAGTACTTATGATAGGAATGGATACTTACCCATTGCTCGCATGTTTAGTAGGTATGGATTTGGCTTATGCTGCTCATGTTTCGATATGAAAGATGCAGTAGAAAATAAGATAGACCCATTTAGCAGCCCGGGAGGTTTGCTTAGGCAGCTGCTGTTTGCTGCGAGGCGCTATGACATACAACTGGAAGGTCAAAGTATTTCATCCGATTTCAATGATATATCATTTGAGCAGGTGCTGAAGATGTCAGAGTTTTACATAGATGGGGCTGAAAAGCGTCCCTTCTCTTTCAACTTCGGGAGAATGGGCAAAAATATGTTTCAATCTCCTTTTTGGGATCGATTTACTCGTTTTGTGAGGCAAATGTCAGATGGGCATAATAATTTTCGAGCCAGATTAAATTCTGTCGCTGACGTGCGTCCCAAGTCCTTGACTAGGGCCGCGTAA 1629 0.4616 MAIASHSTPSLSPSFCSTRTQFTGLSRFPSVTLFQSRSNQTRSSTRRLVVSSRLNSSKFSGADGFVSPDKEDFPYELQHDFPPQRQRKGSPVYVTLPLDAVGPEGRVLRVKAMMVSFRSLALAGIEGVVLEIWWGLVERNEPMVYDWRGYRQLIKMAGTWGLKVRVVFAFHQCGRDSTDPNWIPLPLWVLDEIKKDPDLLYSDTFGTRSTEYISLGCDTLPVLCGRSPIQAYADFMRNFRNTFMPCFGIIITGIQIGMGPDGELRYPSCPSQMIHGRRTEFQEFQCYDKYMIASLNACASDIGMPEWGQGAPPHSTGIFKLNLFSTVKYSPWTWGQGRFFLKWYSGMLLLHGERICREAEAIFRGTEVDISAKVAAFHRHYQTYSHPSELTAGYYSTYDRNGYLPIARMFSRYGFGLCCSCFDMKDAVENKIDPFSSPGGLLRQLLFAARRYDIQLEGQSISSDFNDISFEQVLKMSEFYIDGAEKRPFSFNFGRMGKNMFQSPFWDRFTRFVRQMSDGHNNFRARLNSVADVRPKSLTRAA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0811 542 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 35 521 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 Pfam Glycosyl hydrolase family 14 93 512 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 Gene3D Glycosidases 82 540 - -
Lele50g0811 542 SUPERFAMILY (Trans)glycosidases 88 520 IPR017853 -
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 385 396 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 441 463 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 259 281 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 167 188 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 332 351 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 124 138 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 368 384 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 145 163 IPR001554 GO:0000272|GO:0016161
Lele50g0811 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 403 426 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0811 Lele-ChrLele50 4988503 4991371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0811 91 526 Glycoside Hydrolase AT3G23920 44.543 1.22e-130 391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0811 50 4988503 4991371 Lele50g0811 50 4988503 4991371 ECH
Lele50g0811 50 4988503 4991371 Lele51g0793 51 4794347 4797232 hybridization
Lele50g0811 50 4988503 4991371 Lele52g0795 52 5040161 5046397 hybridization