Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0770 ATGGCGATTGCTTCTTACTCGACTCCGAGCTTCTCACCTTCTTTCTGCTCCACTCGGACCCAATTCACTGGCCTATCGCGCTTCCCCTCCGTCACCTTGTCTCAGTCTCTCTCAAACCAAACTCGCTCTTTAACTCGTCGACTTGTCGTATCGTCTCGGCTCAATTCGTCTAAATTCTCCGGTGCTGATGGATATGTCTCGCCGGACAATGAAGATTTCCCCTACGAACTCCAACACGATTTTTCACCTCAGCGCCAGAGAAAGGGGTCTCCGGTATACGTCACGCTTCCGTTAGATGCCGTGGGCCCGGAGGGGCGAGTCTTGAGGGTGAAAACTATGACGGTCTCGTTCAGGACGCTCGCATTGGTTGGAGTAGAAGGCGTGGTTTTGGAGATTTGGTGGGGTTTAGTTGAGAGGAATGAACCTATGGTTTATGATTGGCGAGGCTATTTGCAGCTCATCAAGATGGCTTGGACGTGCGGCCTGAAGGTTCGAGTTGTCCTTGCGTTTCATCAGTGCGGCACGGACCCTACTGATACTAAACGGATACCTCTTCCTCTATGGGTGCTTGATGAGATAAGAAAAGATCCAGAGTTAGTATATTCAGATAGGTTTGGGACTAGAAGTACTGAATACATCTCACTTGGATGTGATACACTTCCTGTGCTCTGCGGACGATCTCCAATTCAGGCATATGCCGATTTTATGAGGAACTTCAGGGACACCTTCAGGCCTTACTTTGGCATTATCATAACAGGAATACAGATTGGTATGGGTCCTGGTGGCGAATTAAGATATCCTTCATGCCCTTCCCAATTAATCCATGCTAGGCACACTGGATTTGGGGAATTTCAGTGCTATGATAAGTATATGATTGCATCCCTAAAAGCTTGTGCAAGTGATATTGGAATGGATGAATGGGGACAAGGTGCTCCACATGACACTGGAAGTTTCAAGCTCAATTTATTTTCTACTAGTGAGTATGGCCCTTGGACCACGGCACAAGGTAGATTTTTCCTTAAGTGGTACTCAGGGATGCTGCTACTGCATGGGGAAAGAATTTGTAGGGTAGCTGAAACTATATTTAGGGATACAGAAGTCAATTTGTCAGCAAAAGTGGCTGCTATTCACAGGCACTATCAGACTCGTTCCCATCCATCAGAGTTAACCGCAGGATATTACAATACTTATGGCAGGGATGGATACTTACCCATTGCTCGCATGTTTAGTAGGTATGGATTTGGCTTATGCTGCTCGTGCTTTGAAATGCAAGATGCAGTAGAAAATAAGATAAACCCAGTTGGCAGCCCGGAAGGTTTGCTTAAACAGCTGCTGTTGACTGCTAGGCTCTGTGACATACAACTGGAAGGTCAAAATATTGCATCCGACTTCAATGATATATCATTCGAGCAGGTGCTGAAGATGTCAGAGTTTTACATGGATGGGATTGAAAAGCGCCCCTTCTCTTTCAACTTGTTGAGAATGAACGGGAAAGTGTTTGAATCTCGTTTTTGGGATCGATTTACTCGTTTTGTGAGGCAAATGTCAATGCTAGGTGGAAATAATAACTTTCGGGCCAGATTAAATCTGTCACCGACGTGCGTCTCAAGTCGTTGA 1617 0.4595 MAIASYSTPSFSPSFCSTRTQFTGLSRFPSVTLSQSLSNQTRSLTRRLVVSSRLNSSKFSGADGYVSPDNEDFPYELQHDFSPQRQRKGSPVYVTLPLDAVGPEGRVLRVKTMTVSFRTLALVGVEGVVLEIWWGLVERNEPMVYDWRGYLQLIKMAWTCGLKVRVVLAFHQCGTDPTDTKRIPLPLWVLDEIRKDPELVYSDRFGTRSTEYISLGCDTLPVLCGRSPIQAYADFMRNFRDTFRPYFGIIITGIQIGMGPGGELRYPSCPSQLIHARHTGFGEFQCYDKYMIASLKACASDIGMDEWGQGAPHDTGSFKLNLFSTSEYGPWTTAQGRFFLKWYSGMLLLHGERICRVAETIFRDTEVNLSAKVAAIHRHYQTRSHPSELTAGYYNTYGRDGYLPIARMFSRYGFGLCCSCFEMQDAVENKINPVGSPEGLLKQLLLTARLCDIQLEGQNIASDFNDISFEQVLKMSEFYMDGIEKRPFSFNLLRMNGKVFESRFWDRFTRFVRQMSMLGGNNNFRARLNLSPTCVSSR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0770 538 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 40 517 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 SUPERFAMILY (Trans)glycosidases 88 516 IPR017853 -
Lele49g0770 538 Gene3D Glycosidases 81 532 - -
Lele49g0770 538 Pfam Glycosyl hydrolase family 14 93 511 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 331 350 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 145 163 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 384 395 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 402 425 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 167 188 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 367 383 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 124 138 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 440 462 IPR001554 GO:0000272|GO:0016161
Lele49g0770 538 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 259 281 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0770 Lele-ChrLele49 4671487 4674364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0770 67 519 Glycoside Hydrolase AT4G17090 47.072 5.00e-145 427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0770 49 4671487 4674364 Lele49g0770 49 4671487 4674364 ECH
Lele49g0770 49 4671487 4674364 Lele51g0793 51 4794347 4797232 hybridization
Lele49g0770 49 4671487 4674364 Lele52g0795 52 5040161 5046397 hybridization