Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0781 ATGGTCTTGGCTATTCTGGCTGAATCAGATCTAGAAGTTTCAGATGATGTTGCAGAAGCAATTGTGGACAAGACCTTAAAGGACGCAGACACAAATGGCGATGGAAAGATCGACGAAGAGGAATGGAAAGCATTCGTGGCAAAGTATCCGTCTCTGCTAAAGATGATGACTCTTCCATGTCTAAGGTCTGTGTTCAGCACCTACCTATGGCTATACATAGATCTGAAACTAATGGGATGCACTTGCTCCAAACAACGTCTTGCGCATGAAGATCCAGCAGTTCTTGCTGCCCAAACCTGCTTTAACGTATCTGAAATTGAAGGACTATATGAGTTGTTCAAAGAGCTGAGTAGTTCTACGGATGATGACGGGGTTATCAGCAAAGAAGAGTTTCAGCTGTGCTTACTCGGAAGTAGCAAGATACAGAGTCCATGTGCAGACCGGGTTTTTCATTTATTTGACTCAAACAATGATGGAGTAATAGAATTTGGAGAGTTTGTTCGAGCTCTGAGTGTCTTCCATCCAGCTGCACCACAGGAACCAAAAGCTGCTTTTGCATTTCAAATTTATGATCTATGGCAAACAGGCTTCATTGAACGCGACGAGGTAAGAGAGCTGATATTGGCACTTTTAAGCGAGTCAGATTTGATTCTTTCTGAAGACTTAATTGAGGCCATAATTGATCAGACATTTAAAGAAGCAGATTTAAAAGGAGACGGGAAGATCGACCTAGATGAGTGGAATGAATTTGCAGCTCAAAACCCATCCATACTGAGGAATATGACAATTCCATATTTAAAGGATCTTAATACTCAATTTCCTAAGACATGA 831 0.414 MVLAILAESDLEVSDDVAEAIVDKTLKDADTNGDGKIDEEEWKAFVAKYPSLLKMMTLPCLRSVFSTYLWLYIDLKLMGCTCSKQRLAHEDPAVLAAQTCFNVSEIEGLYELFKELSSSTDDDGVISKEEFQLCLLGSSKIQSPCADRVFHLFDSNNDGVIEFGEFVRALSVFHPAAPQEPKAAFAFQIYDLWQTGFIERDEVRELILALLSESDLILSEDLIEAIIDQTFKEADLKGDGKIDLDEWNEFAAQNPSILRNMTIPYLKDLNTQFPKT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0781 276 Gene3D - 1 73 - -
Lele52g0781 276 Gene3D - 91 276 - -
Lele52g0781 276 SUPERFAMILY EF-hand 78 271 IPR011992 -
Lele52g0781 276 ProSiteProfiles EF-hand calcium-binding domain profile. 17 52 IPR002048 GO:0005509
Lele52g0781 276 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Lele52g0781 276 PRINTS Recoverin family signature 242 262 - -
Lele52g0781 276 PRINTS Recoverin family signature 196 214 - -
Lele52g0781 276 PRINTS Recoverin family signature 149 170 - -
Lele52g0781 276 ProSiteProfiles EF-hand calcium-binding domain profile. 178 213 IPR002048 GO:0005509
Lele52g0781 276 Pfam EF hand 147 171 IPR002048 GO:0005509
Lele52g0781 276 PANTHER CALCINEURIN B 1 62 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele52g0781 276 SUPERFAMILY EF-hand 4 59 IPR011992 -
Lele52g0781 276 ProSiteProfiles EF-hand calcium-binding domain profile. 222 257 IPR002048 GO:0005509
Lele52g0781 276 SMART efh_1 21 49 IPR002048 GO:0005509
Lele52g0781 276 SMART efh_1 226 254 IPR002048 GO:0005509
Lele52g0781 276 SMART efh_1 145 173 IPR002048 GO:0005509
Lele52g0781 276 SMART efh_1 182 210 IPR002048 GO:0005509
Lele52g0781 276 Pfam EF hand 22 46 IPR002048 GO:0005509
Lele52g0781 276 Pfam EF hand 120 133 IPR002048 GO:0005509
Lele52g0781 276 CDD EFh 120 171 IPR002048 GO:0005509
Lele52g0781 276 Pfam EF-hand domain pair 181 246 IPR002048 GO:0005509
Lele52g0781 276 ProSitePatterns EF-hand calcium-binding domain. 30 42 IPR018247 -
Lele52g0781 276 FunFam calcineurin B-like protein 3 91 276 - -
Lele52g0781 276 CDD EFh 182 252 IPR002048 GO:0005509
Lele52g0781 276 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0781 Lele-ChrLele52 4937776 4941398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0781 1 68 EF-hand Containing Proteins AT5G24270 51.471 1.39e-15 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0781 52 4937776 4941398 Lele52g0781 52 4937776 4941398 ECH
Lele49g0751 49 4563097 4564474 Lele52g0781 52 4937776 4941398 hybridization
Lele50g0794 50 4894005 4895445 Lele52g0781 52 4937776 4941398 hybridization