Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0794 ATGGGGTGCACTTGCTCCAAACAACGTCTTGAGCATGAAGATCCAGCAGTTCTTGCTACCCAAACCTGCTTTAACGTATCTGAAATTGAAGGACTGTATGAGTTGTTCAAAGAGCTGAGTAGTTCTACGGATGATGATGGGGTTATCAGCAAAGAAGAGTTTCAGCTGTGCTTACTCGGAAGTAGCAAGATACAGAGTCCATGTGCAGACCGGGTTTTTCATTTATTTGACTCAAACAATGATGGAGTAATAGAATTTGGAGAGTTTGTTCGAGCTCTGAGTGTCTTCCATCCAGCTGCACCACAGGAACCAAAAGCTGCTTTTGCATTTCAAATTTATGATCTATGGCAAACAGGCTTCATTGAACGCGACGAGGTAAGAGAGCTGATAATGGCACTTTTAAGCGAGTCAGATTTGATTCTTTCTGAAGACTTAATTGAGGCCATAATTGATCAGACATTTAAAGAAGCAGATTTAAAAGGAGACGGGAAGATCGACCTAGATGAGTGGAATGAATTTGCAGCTCAAAACCCATCCATACTGAGGAATATGACAATTCCATATTTAAAGGATCTTAATACTCAATTTCCTAGGAGATGA 600 0.4067 MGCTCSKQRLEHEDPAVLATQTCFNVSEIEGLYELFKELSSSTDDDGVISKEEFQLCLLGSSKIQSPCADRVFHLFDSNNDGVIEFGEFVRALSVFHPAAPQEPKAAFAFQIYDLWQTGFIERDEVRELIMALLSESDLILSEDLIEAIIDQTFKEADLKGDGKIDLDEWNEFAAQNPSILRNMTIPYLKDLNTQFPRR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0794 199 Pfam EF hand 43 56 IPR002048 GO:0005509
Lele50g0794 199 FunFam calcineurin B-like protein 3 14 199 - -
Lele50g0794 199 Gene3D - 14 199 - -
Lele50g0794 199 Pfam EF hand 70 94 IPR002048 GO:0005509
Lele50g0794 199 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Lele50g0794 199 SMART efh_1 68 96 IPR002048 GO:0005509
Lele50g0794 199 SMART efh_1 149 177 IPR002048 GO:0005509
Lele50g0794 199 SMART efh_1 105 133 IPR002048 GO:0005509
Lele50g0794 199 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Lele50g0794 199 PANTHER CALCINEURIN B 1 197 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele50g0794 199 Pfam EF-hand domain pair 104 170 IPR002048 GO:0005509
Lele50g0794 199 SUPERFAMILY EF-hand 16 190 IPR011992 -
Lele50g0794 199 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Lele50g0794 199 PRINTS Recoverin family signature 165 185 - -
Lele50g0794 199 PRINTS Recoverin family signature 72 93 - -
Lele50g0794 199 PRINTS Recoverin family signature 119 137 - -
Lele50g0794 199 CDD EFh 105 175 IPR002048 GO:0005509
Lele50g0794 199 CDD EFh 43 94 IPR002048 GO:0005509
Lele50g0794 199 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0794 Lele-ChrLele50 4894005 4895445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0794 22 197 EF-hand Containing Proteins AT5G24270 59.091 1.72e-77 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0794 50 4894005 4895445 Lele50g0794 50 4894005 4895445 ECH
Lele50g0794 50 4894005 4895445 Lele51g0776 51 4684266 4684975 hybridization
Lele50g0794 50 4894005 4895445 Lele52g0781 52 4937776 4941398 hybridization