LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0751	ATGGGATGTACTTGCTCCAAACAACGTCTTGCGCATGAAGATCCGGCAGTTCTTGCTACCCAAACCTGCTTTAACGTGTCTGAAATTGAAGGACTGTATGAGTTGTTCAAGGAGCTGAGTAGTTCTGCAGTTGATGACGGGCTTATCAGCAAAGAAGAGTTTCAGCTGTGCTTACTCGGAAATAACAAGATACAGAGCCTATGTGCAGACAGGGTTTTTCATTTATTTGACTCAAAAAATGATGGAGTAATAGAATTTGGAGAGTTTGTTCGAGCTCTGAGTGTCCTTCATCCAGCTGCGCCACAGGCACAGAAAGCAGCTTTTGCATTTCAAATTTATGATCTATGGCAAACAGGCTTCATTGAACGTGACGAGGTAAGAGAGCTGATATTGGCTCTTTTAAGAGAGTCAGATTTGATTCTTTCTGAAGATTTAATTGATGCCATCATTGATCAGGCATTTAAAGAAGCAGATTTAAAAGGAGATGGGAAGATAGATCTAGAGGAGTGGAATGAATTTACAGCTCAAAACCCGTCCATACTGAGGAATATGACTATTCCATATTTAAAGGATCTTAATACCCAATTTCCTAAGGATGATACAAGCAGAGCAGCATGA	618	0.4045	MGCTCSKQRLAHEDPAVLATQTCFNVSEIEGLYELFKELSSSAVDDGLISKEEFQLCLLGNNKIQSLCADRVFHLFDSKNDGVIEFGEFVRALSVLHPAAPQAQKAAFAFQIYDLWQTGFIERDEVRELILALLRESDLILSEDLIDAIIDQAFKEADLKGDGKIDLEEWNEFTAQNPSILRNMTIPYLKDLNTQFPKDDTSRAA	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0751	205	ProSiteProfiles	EF-hand calcium-binding domain profile.	64	99	IPR002048	GO:0005509
	Lele49g0751	205	ProSiteProfiles	EF-hand calcium-binding domain profile.	145	180	IPR002048	GO:0005509
	Lele49g0751	205	SUPERFAMILY	EF-hand	16	190	IPR011992	-
	Lele49g0751	205	Pfam	EF-hand domain pair	46	92	IPR002048	GO:0005509
	Lele49g0751	205	Gene3D	-	14	203	-	-
	Lele49g0751	205	ProSiteProfiles	EF-hand calcium-binding domain profile.	101	136	IPR002048	GO:0005509
	Lele49g0751	205	Pfam	EF-hand domain pair	105	171	IPR002048	GO:0005509
	Lele49g0751	205	PRINTS	Recoverin family signature	119	137	-	-
	Lele49g0751	205	PRINTS	Recoverin family signature	165	185	-	-
	Lele49g0751	205	PRINTS	Recoverin family signature	72	93	-	-
	Lele49g0751	205	PANTHER	CALCINEURIN B	1	198	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Lele49g0751	205	SMART	efh_1	105	133	IPR002048	GO:0005509
	Lele49g0751	205	SMART	efh_1	149	177	IPR002048	GO:0005509
	Lele49g0751	205	SMART	efh_1	68	96	IPR002048	GO:0005509
	Lele49g0751	205	FunFam	calcineurin B-like protein 3	14	200	-	-
	Lele49g0751	205	CDD	EFh	110	173	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0751	Lele-ChrLele49	4563097	4564474	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0751	22	197	EF-hand Containing Proteins	AT5G24270	60.227	1.59e-80	236

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0751	49	4563097	4564474	Lele49g0751	49	4563097	4564474	ECH
	Lele49g0751	49	4563097	4564474	Lele51g0776	51	4684266	4684975	hybridization
	Lele49g0751	49	4563097	4564474	Lele52g0781	52	4937776	4941398	hybridization