Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0683 ATGACTACATCTGCGGCGAAAGAGCATAACAGAAGGACGGGCGGCAAGAAGGCGGTTTATACTTTATACCGTATATTTTCATCAAGCTTGGTGTTTCTGGATCATATTCTGTGTGGAATAGTTGCGCAATCCCTGCTCAGCTTAAAGTGCCGATCATGGGACACGGACACGTTGGCGTCCTGTGCAGGACGATCCCCGAAAAGGATTCGTCGACGACGATAAGCCAAGACCAAAGATTTCAGCAAATTAGAGCTGAAAAAGGATCATGCCAATCGACCACTATGGGCTTGTGGCAATGGTCGGATATTCCTCGAGACTTTCTCTCCCTTGTACAAACAAGCTTATGATTTCCTTATTGCCATAGCGGAACCCGTTTGCAGGCCGGAGTCAATGCACGAATACAACCTCACTCCACATTCCCTGTATGCTGCGGTTTCAGTTGGTCTGGAAACAGAAACGATCATATCAGTTTTGAACAAGTTATCCAAGACTATGCTCCCTAAAGAGATGATTAAGTTTATTCAGGATTCAACTGCAAATTATGGCAAAGTAAAGCTTGTACTTAAGAAAAATCGATACTTTATTGAATCTCCATTTCCAGAGGTGTTGAAGACACTGCTCAGAGATGAAGTTATATCTCGATCAAGGATCTCTTCTGAGGGTGTAACTGGAGATGGATTTACAATTAGCAAAACAGCAGGTGAAATTGAAGGCACTCACGATGAGTTGCTGAATGAAGCAGAAGTAGCTGCTGCTGCAGAAGAGAAAGAAACTCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGATGCTTGCCAAATGCATTGAATTATCCCATGTTGGAGGAGTACGACTTTAGAAATGATACGGTCAACCCTGATCTGGATATGGAACTAAAGCCTCAAGCACAGCCACGGCCATATCAAGAGAAGAGCTTGAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATCATAGTTCTACCTTGTGGTGCTGGTAAGTCTCTTGTTGGTGTTTCTGCGGCCTGCCGTATAAAAAAGAGCTGTCTTTGTTTGGCAACAAATGCTGTGTCTGTGGACCAGTGGGCTTTTCAGTTTAAGCTATGGTCAACCATCCGAGATGAAAATATCTGTCGTTTCACATCTGATAGTAAAGAGAGGTTCCGTGGTAATGCTGGAGTGGTTGTGACAACATATAATATGGTTGCTTTTGGTGGCAAACGGTCTGAAGAATCTGAGAAGATCATTGAAGAAATTAGAAACAGAGAATGGGGATTGCTTCTCATGGATGAGGTACATGTGGTTCCTGCACATATGTTTCGGAAGGTCATCAGCCTCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACACTTGTGAGAGAGGATGAAAGGATTACAGATCTGAATTTTCTCATTGGTCCCAAGTTGTATGAAGCAAATTGGTTGGATCTAGTGAAAGGTGGGTTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAATTTTTTGCGGAGTATCTGAAGAAGGAGAATTCCAAGAAGAGGCAGGCGCTCTATGTGATGAATCCAAATAAGTTCAGAGCATGCGAGTTTCTCATAAAGTACCATGAAACACAGCGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTAACTGAGTACGCAATGAAACTTCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAAGCCTTCAAAACTAGCAAAGATGTCAACACTATATTCCTTTCCAAGGTGGGTGATAACTCAATTGATATTCCAGAAGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCCCAACGTCTAGGTCGTATTCTTAGGGCAAAGGGCAAGCTTCAGGATAGGATGGAAGGCGGTAAGGAGGAGTATAATGCATTCTTTTATTCTCTCGTGTCTACAGATACCCAGGAGATGTACTACTCAACCAAGAGGCAGCAATTTTTAATTGATCAGGGTTATAGCTTTAAGGTAATTACAAGCTTACCTCCGGCTGGAGAAGAAGCTTCACTGAATTATTATCATCTTGAAGATCAATTGGCGCTTCTTGGAAAGGTCTTGAGTGCTGGTGACGACGCCGTTGGTCTAGAGCAACTTGAAGAAGATGCAGATGAAATAGCTCTTCACAATGCCCGGCGTTCGATGGGATCCATGAGCGCCATGTCGGGTGCAAAGGGAATGGTTTACATGGAGTATAGTACCGGGCGTAACAAAGGTCAGGCGCAGATCAAGAGCAAGCCGAAAGATCCAGCCAAGCGACACTTCTTATTTAAAAGACGCTATGGCTCATAG 2391 0.4287 MTTSAAKEHNRRTGGKKAVYTLYRIFSSSLVFLDHILCGIVAQSLLSLKCRSWDTDTLASCAGRSPKRIRRRRXAKTKDFSKLELKKDHANRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTMLPKEMIKFIQDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDEVISRSRISSEGVTGDGFTISKTAGEIEGTHDELLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDENICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIKYHETQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMEGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPAGEEASLNYYHLEDQLALLGKVLSAGDDAVGLEQLEEDADEIALHNARRSMGSMSAMSGAKGMVYMEYSTGRNKGQAQIKSKPKDPAKRHFLFKRRYGS 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0683 796 SMART ultradead3 305 486 IPR014001 -
Lele52g0683 796 Pfam Type III restriction enzyme, res subunit 308 464 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lele52g0683 796 SMART helicmild6 565 643 IPR001650 -
Lele52g0683 796 PANTHER RAD25/XP-B DNA REPAIR HELICASE 83 765 - -
Lele52g0683 796 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 320 482 IPR014001 -
Lele52g0683 796 Pfam Helicase conserved C-terminal domain 94 217 IPR032830 -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 321 343 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 532 547 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 290 316 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 552 574 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 618 643 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 746 765 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 599 617 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 428 448 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 178 197 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 494 516 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 92 112 - -
Lele52g0683 796 PRINTS Xeroderma pigmentosum group B protein signature 655 678 - -
Lele52g0683 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 742 IPR027417 -
Lele52g0683 796 FunFam Probable DNA repair helicase RAD25 299 490 - -
Lele52g0683 796 Gene3D - 491 731 IPR027417 -
Lele52g0683 796 Gene3D - 299 490 IPR027417 -
Lele52g0683 796 TIGRFAM rad25: DNA repair helicase rad25 79 792 IPR001161 GO:0003678|GO:0006289|GO:0006367
Lele52g0683 796 Pfam ERCC3/RAD25/XPB C-terminal helicase 490 738 IPR032438 -
Lele52g0683 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 484 IPR027417 -
Lele52g0683 796 CDD SF2_C_XPB 501 665 - -
Lele52g0683 796 CDD DEXHc_XPB 301 470 - -
Lele52g0683 796 FunFam Putative DNA repair helicase rad25 491 733 - -
Lele52g0683 796 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 537 703 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0683 Lele-ChrLele52 4322603 4329356 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0683 52 4322603 4329356 Lele52g0683 52 4322603 4329356 ECH
Lele49g0661 49 4020229 4026874 Lele52g0683 52 4322603 4329356 hybridization
Lele50g0691 50 4270348 4279314 Lele52g0683 52 4322603 4329356 hybridization