Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0691 ATGGATGGCGACAGGACAAAACTATATACAGTCTTTATCTCGAGGGAGATACTTGGATTTGCTTCGCTGTGGTTTCTCTCCTTTGTTAATGTATCACGTTCCTCCAAAATTCTGATCCACGTGAAACTCAACACAGCATATGATCATGGCACTTCCTCACGAGAAAGTGGCCCACAGTTTTTGCCTTTGCGGTTTGTACCGTATATTTTCATCAAGTTGAGTGTTTCTGGATCATATCCTGTGTGGAATAGTTGCGCAATCCCTGCTCAGCTTAAAGTTCCGATCATGGGACACGGACACGGCGACAAAGGCCGACCCTTCAAAAAATTCAAGGCCGCCGCTAAATCGGACGATCCCCGAAAAGGATTCGTCGACGACGATGTGTTTATGGGCGATGATGGTTATGATGATGACGAAGCCAAGACCAAAGATTTCAGCAAATTAGAGCTGAAAAAGGATCATGCAAATCGACCACTTTGGGCTTGTGGCAATGGTCGGATATTCCTCGAGACCTTCTCTCCCTTGTACAAACAAGCTTATGATTTCCTTATTGCCATAGCGGAACCCGTTTGCAGGCCGGAGTCAATGCACGAATACAACCTCACTCCACATTCCCTGTATGCTGCGGTTTCAGTTGGTCTGGAAACAGAAACGATCATATCAGTTTTGAGCAAGTTATCCAAGACTATGCTCCCTAAAGAGATGATTAAGTTTATTCAGGATTCAACTGCAAATTATGGCAAAGTAAAGCTTGTACTTAAGAAAAATCGATACTTTATTGAATCTCCATTTCCAGAGGTGTTGAAGACACTGCTCAGAGATGAAGTTATATCTCGATCAAGGATCTCTTCTGAGGGTGTAACTGGAGATGGATTTACAATTAGCAAAACAGCAGGTGAAATTGAAGGCACTCACGATGAGTTGCTGAATGAAGCAGAAGTAGCTGCTGCTGCAGAAGAGAAAGAAACTCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAACGTAAAGCAACGATGCTTGCCAAATGCATTGAATTATCCCATGTTGGAGGAGTATGACTTTAGAAATGATACGGTCAACCCTGATCTGGATATGGAACTAAAGCCTCAAGCACAGCCACGGCCGTATCAAGAGAAGAGCTTGAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATCATAGTTCTACCTTGTGGTGCTGGTAAGTCTCTTGTTGGTGTTTCTGCGGCCTGCCGTATAAAAAAGAGCTGTCTTTGTTTGGCAACAAATGCTGTATCTGTGGACCAGTGGGCTTTTCAGTTTAAGCTATGGTCAACCATCCGAGATGAAAATATCTGTCGTTTCACGTCTGATAGTAAAGAGAGGTTCCGTGGTAATGCTGGAGTGGTTGTGACAACATATAATATGGTTGCTTTTGGTGGCAAACGGTCTGAAGAATCTGAGAAGATCATTGAAGAAATTAGAAACAGAGAATGGGGATTGCTTCTCATGGATGAGGTACATGTGGTTCCTGCACATATGTTTCGGAAGGTCATCAGCCTCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACACTTGTGAGAGAGGATGAAAGGATTACAGATCTGAATTTTCTCATTGGTCCCAAGTTGTATGAAGCAAATTGGTTGGATCTAGTGAAAGGTGGGTTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAATTTTTTGCGGAGTATCTGAAGAAGGAGAATTCCAAGAAGAGGCAGGCGCTCTATGTGATGAATCCAAATAAGTTCAGAGCATGCGAGTTTCTCATAAAGTACCATGAAACACAGCGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTAACTGAGTACGCAATGAAACTTCGCAAACCAATGATATATGGCGCTACAAGTCATGTTGAGAGGACAAAAATTCTACAAGCCTTCAAAACTAGCAAAGATGTCAACACTATATTCCTTTCCAAGGTGGGTGATAACTCAATTGATATTCCAGAAGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCCCAACGTCTAGGTCGTATTCTTAGGGCAAAGGGCAAGCTTCAGGATAGGATGGCGGGCGGTAAGGAGGAGTATAATGCATTCTTTTATTCTCTCGTGTCTACAGATACCCAGGAGATGTACTACTCAACCAAGAGGCAGCAATTTTTAATTGATCAGGGTTATAGCTTTAAGGTAATAACAAGCTTACCTCCAGCTGGAGAAGAAGCTTCACTGAGTTATTATCATCTTGAAGATCAATTGGCGCTTCTTGGAAAGGTCTTGAGTGCTGGTGACGACGCGGTTGGTCTAGAGCAACTTGAAGAAGATGCAGATGAAATAGCTCTTCACAATGCCCGGCGTTCGATGGGATCCATGAGCGCCATGTCGGGTGCAAAGGGAATGGTTTACATGGAGTACAGTACCGGGCGTAACAAAGGTCAAGCGCAGATCAAGAGCAAGCCGAAAGATCCAGCCAAGCGACACTTCTTATTTAAAAGACGCTATGGCTCATAG 2586 0.43 MDGDRTKLYTVFISREILGFASLWFLSFVNVSRSSKILIHVKLNTAYDHGTSSRESGPQFLPLRFVPYIFIKLSVSGSYPVWNSCAIPAQLKVPIMGHGHGDKGRPFKKFKAAAKSDDPRKGFVDDDVFMGDDGYDDDEAKTKDFSKLELKKDHANRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLSKLSKTMLPKEMIKFIQDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDEVISRSRISSEGVTGDGFTISKTAGEIEGTHDELLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDENICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIKYHETQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPAGEEASLSYYHLEDQLALLGKVLSAGDDAVGLEQLEEDADEIALHNARRSMGSMSAMSGAKGMVYMEYSTGRNKGQAQIKSKPKDPAKRHFLFKRRYGS 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0691 861 PANTHER RAD25/XP-B DNA REPAIR HELICASE 148 830 - -
Lele50g0691 861 CDD SF2_C_XPB 566 730 - -
Lele50g0691 861 Pfam Type III restriction enzyme, res subunit 373 529 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lele50g0691 861 FunFam Probable DNA repair helicase RAD25 364 555 - -
Lele50g0691 861 Pfam Helicase conserved C-terminal domain 159 282 IPR032830 -
Lele50g0691 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 807 IPR027417 -
Lele50g0691 861 TIGRFAM rad25: DNA repair helicase rad25 144 857 IPR001161 GO:0003678|GO:0006289|GO:0006367
Lele50g0691 861 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 547 IPR014001 -
Lele50g0691 861 SMART helicmild6 630 708 IPR001650 -
Lele50g0691 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 549 IPR027417 -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 720 743 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 811 830 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 157 177 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 493 513 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 683 708 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 617 639 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 243 262 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 386 408 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 355 381 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 597 612 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 664 682 - -
Lele50g0691 861 PRINTS Xeroderma pigmentosum group B protein signature 559 581 - -
Lele50g0691 861 FunFam Putative DNA repair helicase rad25 556 798 - -
Lele50g0691 861 CDD DEXHc_XPB 366 535 - -
Lele50g0691 861 Gene3D - 556 796 IPR027417 -
Lele50g0691 861 Gene3D - 364 555 IPR027417 -
Lele50g0691 861 SMART ultradead3 370 551 IPR014001 -
Lele50g0691 861 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 602 768 IPR001650 -
Lele50g0691 861 Pfam ERCC3/RAD25/XPB C-terminal helicase 555 803 IPR032438 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0691 Lele-ChrLele50 4270348 4279314 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0691 50 4270348 4279314 Lele50g0691 50 4270348 4279314 ECH
Lele50g0691 50 4270348 4279314 Lele51g0678 51 4114383 4122168 hybridization
Lele50g0691 50 4270348 4279314 Lele52g0683 52 4322603 4329356 hybridization